Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq15 152 5e-32 >seq15 Length=39264731 Score = 152 bits (168), Expect = 5e-32 Identities = 587/921 (64%), Gaps = 16/921 (2%) Strand=Plus/Minus Query 93726 CTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGA 93785 ||||| |||||| ||||||||| || ||||| || ||||| |||||| || | || Sbjct 17056241 CTTTGGCTTCAAGACTCTGGAGCGCTCCTACCTGCTAAAGATCAATGGCAAAGTAGCTGA 17056182 Query 93786 GCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAA 93845 ||| ||||| || |||| ||| | || || | || || ||||| || || |||| Sbjct 17056181 GCGTCCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATAT--CGAA 17056124 Query 93846 TGTTTTGCGGGCTTTCAGAG-----ACATGCGG---GACAAGAGGTATACCATGGCCACC 93897 |||| | | ||| || ||| | || ||| ||| ||| ||| || Sbjct 17056123 ------GCGGCCATCGAGACCTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCC 17056070 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 |||||||| ||||| || || ||| ||| ||| |||| || |||||| | | Sbjct 17056069 CCGACCCTCTTCAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCC 17056010 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| ||| ||| || || | ||||| || ||| | || || |||||| Sbjct 17056009 ATGAAGGATGACAGCATTGAGGGGATCTACGACACACTGAAGCATTGCGCCCTCATCTCC 17055950 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 |||| || || || || || | ||| | | | | ||| ||| |||||| Sbjct 17055949 AAATCAGCCGGAGGGATTGGCGTGGCAGTCAGCTGCATCAGATCCACGGGGAGCTACATT 17055890 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||| ||||| ||| |||||||| || ||||| ||| | |||| | ||||||| | Sbjct 17055889 GCCGGCACCAACGGCTGTTCCAACGGGCTTGTCCCAATGTTGAGGGTGTACAACAACACA 17055830 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || || || || || ||||| || | || || | ||||| | || || ||| Sbjct 17055829 GCACGGTATGTTGATCAGGGGGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAG 17055770 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 ||||||||| || ||| | ||| | || ||| |||||| || || || | Sbjct 17055769 CCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAG 17055710 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 || | ||||| ||||| |||||||| || ||| | || ||||| || ||||| || || Sbjct 17055709 CAGCGAGCCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTG 17055650 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||||| ||| | |||| || | || || || || ||||||||| || Sbjct 17055649 GAGAACAACGAAGACTGGTCCCTGATGTGCCCAGCCGACTGCCCCGGACTGGATGAGTGC 17055590 Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAG 94437 || || | |||||||| | || | | || || | |||| | || | | Sbjct 17055589 TGGGGGGAGGAGTTTGAAGAACTCTACACCAGATATGAGAGGGAGGGGAGGGTGAAGCGT 17055530 Query 94438 GTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACG 94497 || || | ||| | |||| ||| || ||| | || ||| || || || ||| Sbjct 17055529 GTGGTGAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACTGGGACG 17055470 Query 94498 CCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTG 94557 || ||||| | | ||| ||| | |||| ||| |||||||||| | || || Sbjct 17055469 CCGTACATGGTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACC 17055410 Query 94558 ATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCT 94617 |||||| || || || ||||| || || |||||||| ||| ||||||| | || Sbjct 17055409 ATCAAGTGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCG 17055350 Query 94618 GTGTGTAACCTGGGCTCCATC 94638 || || || |||| ||| ||| Sbjct 17055349 GTCTGCAATCTGGCCTCTATC 17055329 Score = 140 bits (154), Expect = 3e-28 Identities = 226/318 (71%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 |||||||| |||||| |||| | |||| || || ||| |||| |||||| ||| Sbjct 17054988 AGGGCATTCTTCAGTACGACATGTGGGAGAAGACTCCAACGGACCTGTGGGACTGG-AAG 17054930 Query 95054 CT-CT--ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 || || | | | ||| |||||| || |||| ||| ||||| ||||||| | Sbjct 17054929 CTGCTGAAGGAGAAGATCGC--CAAACATGGCGTGAGGAACAGCCTGCTGCTGGCCCCGA 17054872 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 |||||||||||||||| || |||||||| |||||||||||||| |||| ||| ||| Sbjct 17054871 TGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACAA 17054812 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 |||| | |||| | | ||||||||| | ||||| || | || ||||| ||||| | Sbjct 17054811 GCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCTGC 17054752 Query 95231 TACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCG 95290 | ||||||||| ||| ||||| ||| || | |||||||| ||| | ||| Sbjct 17054751 TCAAAGACCTGACGGAGAGGGGCCTGTGGAATGAGGAGATGAAGAACCAGCTGAT-CGCT 17054693 Query 95291 C-CAACGGCTCCGTCCAG 95307 | ||| || ||| ||||| Sbjct 17054692 CACAATGGATCCATCCAG 17054675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494707325569320