Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 181 1e-40 seq1437 86.0 6e-12 seq11 84.2 2e-11 >seq15 Length=39264731 Score = 181 bits (200), Expect = 1e-40 Identities = 934/1472 (63%), Gaps = 46/1472 (3%) Strand=Plus/Plus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || || || ||||||| | |||||||| |||| | ||| || | Sbjct 17054742 AGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTG 17054801 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||||| ||| | | || | ||| ||||| ||||| || || || || |||| Sbjct 17054802 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 17054861 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188 || || ||||| |||| || || |||| || ||| || || | ||| Sbjct 17054862 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 17054921 Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAAC 153248 |||| | || ||| |||||||| ||| || ||| | ||||||||||||||| | Sbjct 17054922 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGA 17054981 Query 153249 ACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG--GCCA 153306 | || ||| | || ||| || |||| ||| |||| | || | || |||| Sbjct 17054982 ATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCC-TAGC-TCGGCAGCCA 17055039 Query 153307 GTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAA 153366 | |||||||| || || | ||| ||||||| || || || ||| || | ||||| | Sbjct 17055040 GCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGAGCA 17055099 Query 153367 CGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCT 153426 || || ||| || | || |||| || | ||||| || |||| |||| Sbjct 17055100 GTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATGAGGATGAAGGCATCAGCCAATCCCT 17055159 Query 153427 GGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGAT 153486 ||| |||| || || || | || | ||| | ||| || | | || | Sbjct 17055160 GGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGT 17055219 Query 153487 AGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGT----TATCGCC 153542 ||| ||| ||||||| ||||| | ||| | || | ||||| || ||| ||| Sbjct 17055220 AGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTAT-GCC 17055278 Query 153543 TTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAAT 153601 ||||| | || ||||| ||| || | | ||||| || || | || || Sbjct 17055279 ---AGTTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGAGCGAT 17055331 Query 153602 AGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCA 153661 ||| |||||||| ||||| ||| ||| || | |||||| ||||| || | ||| Sbjct 17055332 AGAGGCCAGATTGCAGACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCA 17055391 Query 153662 GAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTC 153721 ||||||||||| || ||| ||||| ||| ||||| ||||| || | ||||| ||||| Sbjct 17055392 AAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 17055451 Query 153722 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATG 153778 |||| ||| ||||||||| || || || |||| |||| ||| | ||| || Sbjct 17055452 TTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACC-AT- 17055509 Query 153779 CAGGTCCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTA 153835 || | ||| || || ||| |||| | | ||||| ||||| |||| ||| Sbjct 17055510 -AGCTGCTGAGCCTTCACCACACGCTTC---ACCCTCCCCTCCCTCTCATATCTGGTGTA 17055565 Query 153836 CAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACAT 153895 ||| |||||||| || || |||| || | || ||||| || | || ||||| Sbjct 17055566 GAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACAT 17055625 Query 153896 CAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGC 153955 ||| ||||| |||| | | || || |||||| || || || | ||| || || Sbjct 17055626 CAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGC 17055685 Query 153956 GTACATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGC 154013 ||| | ||||| | || | ||| |||||| ||| |||| ||||| | || Sbjct 17055686 GTAGAACAGGTCCCTGGCTCGCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGG 17055743 Query 154014 ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGC 154070 | | | | | || ||||||||| || | ||| | ||| | ||| || | | Sbjct 17055744 AAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTG 17055803 Query 154071 TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGG 154130 || || |||||||| || | || | | |||||| | || | || ||| || | || Sbjct 17055804 TTGCCCCCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGC 17055863 Query 154131 CCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACG 154190 ||| | | ||||||||| || | ||| || || | | ||||||| Sbjct 17055864 CCGTTGGAACAGCCGTTGGTGCCGGCAATGTAGCTCCC-----CGTGGATCTGATGCAGC 17055918 Query 154191 TTA-----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCC 154245 | | |||||||| || ||| | | || || ||| ||||| | ||| || Sbjct 17055919 TGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGT 17055978 Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305 |||||| || || ||||| || || | | |||||| ||| || ||| |||| Sbjct 17055979 CGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCG 17056038 Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 | || ||||| || |||||||| || ||||| || ||| || | || Sbjct 17056039 GCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACA 17056098 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 || | ||| || |||||||| |||||||||| ||||| || || | || || | Sbjct 17056099 GCAGGTTGTAGGTCTCGATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCC 17056158 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACT 154457 ||||||||||||||||||||| || || ||| Sbjct 17056159 TCATGAGCATGTGCTGCGGACGCTCAGCTACT 17056190 >seq1437 Length=1065406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || || || || || || || | | Sbjct 779132 GACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 779191 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||||||||| || || || ||||| ||||| |||||| || | Sbjct 779192 AAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACA 779251 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||| | || | || || ||||| || ||||| Sbjct 779252 TTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTC 779311 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 779312 ACAAAGATCTGCATG 779326 >seq11 Length=32426571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| |||||||| | ||| || |||||| |||| ||| ||||| ||||||||||| Sbjct 23758258 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGAT 23758199 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740 | || || | ||||| ||||| ||| | ||||| || ||| Sbjct 23758198 TACTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATATATGGT 23758158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246476180240