Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15 134 1e-26 seq1437 98.7 9e-16 >seq15 Length=39264731 Score = 134 bits (148), Expect = 1e-26 Identities = 483/739 (65%), Gaps = 30/739 (4%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| | ||||||||| || | ||| || || | || | |||||| ||| | | Sbjct 17054761 GGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGG 17054820 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||| ||||||||||| || || ||||| || || | || || ||||| |||| Sbjct 17054821 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCA 17054880 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC---GTAGTTTGGACCAAT 146239 ||||| ||| |||||||| ||| | ||||| ||| | || || ||| | Sbjct 17054881 GCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTT---CCAGT 17054937 Query 146240 TCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACA 146299 ||||| | ||||| ||| | | | ||||||| || | | |||| || Sbjct 17054938 CCCACA---GGTCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGAATGCCCTTACTCA 17054994 Query 146300 GGGGGCTATTCT-CGTACGATTCATAAGGACCGTCGATCTTG-GCCAGTTCGCAGCTAGC 146357 || | | || | |||| ||||| | || | | || ||||| |||||||| || Sbjct 17054995 CCGG-CGAGCCTTCATACGTCTCATAGGTGCC-TAGCTCGGCAGCCAGCTCGCAGCTCGC 17055052 Query 146358 TTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG-GCCTCCT 146416 ||||| ||| | | |||| || ||||| |||| | ||||| || || ||||| Sbjct 17055053 TTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGA-GCAGTTGAGCCTCGG 17055111 Query 146417 CGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACA 146475 ||| || |||| ||| || | || | ||||| || || | ||||| | ||||| Sbjct 17055112 GGCTTTCAAAGGG-ATAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATT 17055170 Query 146476 CCAACGGGGCGGTGTTTCTTGTTA---CTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTG 146532 || | || | ||| | |||| || | || | || | | | |||| |||| Sbjct 17055171 CCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG---TAGTAGTTG 17055227 Query 146533 CTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATT--CAGCAGGA 146590 ||||||| | |||||| | || | || | | ||| |||| || | ||| Sbjct 17055228 ATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCA--CGTATGCCAGTTTTT 17055285 Query 146591 CATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGT 146650 | ||||| | || | | | ||||| || |||||| ||||||||||||| | Sbjct 17055286 TAAAGTCATAAGTCCGC---TCAGGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGAT 17055342 Query 146651 TACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGC 146710 | || || || |||||||||| |||| || || || | ||| |||||||||| Sbjct 17055343 TGCAGACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGC 17055402 Query 146711 ACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCA 146770 |||||||| |||||| ||| | ||||| || | ||||||||| ||| ||||||| || Sbjct 17055403 ACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCA 17055462 Query 146771 TGTACGGTCCCCCGGTTTC 146789 ||||||| ||| ||||| Sbjct 17055463 TGTACGGCGTCCCAGTTTC 17055481 >seq1437 Length=1065406 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 126874 TTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAAT 126933 || || |||||| ||||| | | |||| || | || | || ||||| || || || Sbjct 777949 TTGCTTTACTGC-CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGAT 778007 Query 126934 ATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTG 126993 ||||| ||| | ||||| ||| || ||||| || ||||| |||||| | ||| Sbjct 778008 GTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTG 778067 Query 126994 CTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTC 127053 ||| || || || ||||||||||| ||| |||||| ||||| | || | |||||| Sbjct 778068 CTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC 778127 Query 127054 CGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| || || | ||| | || ||||| || || || || ||||| |||||||| Sbjct 778128 ACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 778187 Query 127114 G 127114 | Sbjct 778188 G 778188 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 778901 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778960 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| |||||| |||| Sbjct 778961 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 779020 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| || || || Sbjct 779021 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 779080 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 779081 TTCACAAAGATCTGCATG 779098 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 778219 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778278 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| || ||| |||| Sbjct 778279 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCC-TGGATTTGGCCTTG 778337 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| || || || Sbjct 778338 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 778397 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 778398 TTCACAAAGATCTGCATG 778415 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || ||| Sbjct 778673 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778732 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| |||||| |||| Sbjct 778733 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 778792 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| || || || Sbjct 778793 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 778852 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 778853 TTCACGAAGATCTGCATG 778870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || ||| Sbjct 778446 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778505 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| |||||| |||| Sbjct 778506 GCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 778564 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || ||||| || || || Sbjct 778565 ACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 778624 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 778625 TTCACGAAGATCTGCATG 778642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485542368080