Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq15 123 2e-23 seq1437 82.4 7e-11 >seq15 Length=39264731 Score = 123 bits (136), Expect = 2e-23 Identities = 462/717 (64%), Gaps = 17/717 (2%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || |||||||||||| ||||||||||||||||||||||||| | ||| ||| Sbjct 17055481 GAAACTGGGACGCCGTACATGGTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAG 17055422 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATAC---AGCGAT 123722 || |||| || || || || || || |||||| | ||||| |||| ||| ||| | Sbjct 17055421 AATCTGGGCACCATCAAGTGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAG 17055362 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAAC 123782 | || | ||||| || || ||| |||| || || | || | |||| Sbjct 17055361 GACG---AGGTGGCGGTCTGCAATCTGGCCTCTATCGCTCTCAACATGTACGTCACCCCT 17055305 Query 123783 G-GCG--CTTTTAATTTCCAAACGCT--CAAACGCATAACAAAAACTGTAGTAAAGAATT 123837 | ||| ||| | | || ||| || || ||| | || ||| | || | ||| | Sbjct 17055304 GAGCGGACTTATGACTTTAAAAAACTGGCATACG--TGACCAAAGTAATTGTCAGGAACT 17055247 Query 123838 TGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGA 123897 ||||||| ||||||| | || | || || |||| ||||| | ||| || || Sbjct 17055246 TGAACAAGGTTATCGACATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGC 17055187 Query 123898 AACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCA 123957 ||||| ||| | ||| | || | || || ||||| || || || | | |||| Sbjct 17055186 GCCACAGGCCGATAGGAATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTCATGCGTT 17055127 Query 123958 TGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATT 124017 || | |||||| ||| || | |||| || | || || || ||||| || | Sbjct 17055126 ATCCCTTTGAAAGCCCCGAGGCTCAACTGCTCAACATCCAGATCTTTGAGACAATCTACT 17055067 Query 124018 ACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACG 124077 | | ||||||||| ||||||||||| || || | ||| | || || | || | Sbjct 17055066 ATGCCGCTTTGGAAGCGAGCTGCGAGCTGGCTGCCGAGCTAGGCACCTATGAGACGTATG 17055007 Query 124078 CGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAA 124137 ||| |||| ||| || ||| | ||||||||||||||| | || || || Sbjct 17055006 AAGGCTCGCCGGTGAGTAAGGGCATTCTTCAGTACGACATGTGGGAGAAGACTCCAACGG 17054947 Query 124138 ATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTC 124195 | |||||||||||| | | || | | | |||| | || || || | ||| Sbjct 17054946 ACCTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACATGGCGTGAGGAACAG 17054889 Query 124196 GCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATC 124255 ||| || |||| ||||| ||||| |||| || || || | || |||||||| || Sbjct 17054888 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 17054829 Query 124256 CTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCA 124312 | ||||| | | ||| | ||| | ||| || || ||| | | || || ||||| Sbjct 17054828 CATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCA 17054772 >seq1437 Length=1065406 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | ||| | || || || || || || || ||||| ||||| || || ||| Sbjct 749787 ATGCCACCCCTGAGACGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 749846 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || || |||||| | |||||||| || Sbjct 749847 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGG 749906 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| || ||||| |||| || | |||||| | ||| Sbjct 749907 GGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTTGGCTCA 749966 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || || ||||| ||||| || ||||| Sbjct 749967 ACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 750016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451988696347320