Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq17 131 2e-25 seq8 96.9 5e-15 seq13 95.1 2e-14 >seq17 Length=40919683 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || || ||||| || || || || |||||||||||||| ||||||||| || Sbjct 2456357 GCGGTGTTGACCATGTCGAAGCCGACTGTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 2456416 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| || |||| || || || | ||| || |||||||||| ||| | Sbjct 2456417 GGGGAGCAGATGGGATTTCCCATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACC 2456476 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || | || || |||||| | || | || || || || | | ||| | |||||| Sbjct 2456477 ATTGTTTCCCCAAAGATGCCGTTAGGTCTGGGCTTCTCCACCAGCAGGCCCGGGTAGAGC 2456536 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| |||||||| || || || | |||| | | ||||| || || ||||| ||| Sbjct 2456537 TCCACAGCATCGACGTCCCCGTACAGCTCCTCCAGCACCGCAGCCATTTCTTTCTCCCCT 2456596 Score = 113 bits (124), Expect = 7e-20 Identities = 183/260 (70%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| ||||||||||| | |||||||| || || | | | || ||||||| | | Sbjct 2457426 CCGTCCGGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCAGTCAC 2457485 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 || || ||||| | || || || | ||| | || | | || | ||| | ||| Sbjct 2457486 GACAGAGGTGTTGAAGACAAACTGCTTGTAGCTGTAATCTGTCTCCTCAATGTGGAAACT 2457545 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 |||||||| ||||| |||||| | || ||||| |||||||||| || || |||||||| Sbjct 2457546 ATCAGGCATCAGAGGGTGCCAGTGATAAAGGGTGTTGAACTCGGATGCAATGCGGTTCTG 2457605 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| || || | ||| |||||||| | || | |||||| || Sbjct 2457606 GTACTGGAAGCGCTGGT--TAAAGAGCAGCTCAGGGTCAAACTTCAGTTTGAAGTGATAG 2457663 Query 9670 CCGCTGAGTTGCTGGACATA 9689 || ||||| ||||| || || Sbjct 2457664 CCACTGAGATGCTGCACGTA 2457683 Score = 93.3 bits (102), Expect = 6e-14 Identities = 206/305 (68%), Gaps = 23/305 (8%) Strand=Plus/Plus Query 9964 ACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGTT 10023 |||||||| |||| ||| |||||||| || || | |||||| ||||||||||||| | Sbjct 2458424 ACCTGATATTTCAGCTTGCCATCCTTAAAGAGTCTCAGCTTGTGCTGCTTCTCCAGGTTG 2458483 Query 10024 TCGCCGTAGATGTGACTGAGATCGACCTGCGAGAGAACG--AAGACTGTCGATAACGGCC 10081 || ||||||||||| |||| || ||||| || | | | | | | | | ||| || Sbjct 2458484 TCACCGTAGATGTGGTTGAGGTCCACCTGAAAGTGTAAGACACGCCAATTAAAAACTGCG 2458543 Query 10082 TTG--TTCGaaaaatca-----------aaaaaCCCA-ACCATC---GCCGTTCGCTCTT 10124 | | || ||||| | ||||||| | | | || ||| || | ||| Sbjct 2458544 TCGCATT---AAAATGAGTTTGCTTTTCAAAAACCGAGATCTTCAGACCCGCTC-CACTT 2458599 Query 10125 ACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAAAAT 10184 |||||||| ||| | |||||||| || |||| | ||| || | | || || Sbjct 2458600 ACCCCATGACCCTTAGCAACAGTGAAAGCAGGCCCTCTCTTCATGTCAGATTTGAAGAAC 2458659 Query 10185 TGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCGGGG 10244 ||||| || ||||| || |||| || || ||||||| |||||||||| || || || Sbjct 2458660 TGGTGGGTGAAGTGCTGTGCGAAGAAGGCAAACATCAAACTGGTGCCCTGCGGGTCTGGT 2458719 Query 10245 ATAAA 10249 ||||| Sbjct 2458720 ATAAA 2458724 >seq8 Length=62059223 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || || || || || || || | || || ||||||||||| |||||||| |||| ||| Sbjct 16800826 TTTACTATTTCAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAG 16800885 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || ||| ||| ||| ||||| | ||| || || || |||| ||| | ||||| Sbjct 16800886 CATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTT 16800945 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||||| || | || | ||| || | | ||||| | ||| | ||| | | Sbjct 16800946 TCTCCAAATATGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGA 16801005 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTC-GGCAGCTATCTCCT 9167 || || | ||| || ||||| |||| | || ||| ||||||||| Sbjct 16801006 GCGTCAATGTCACCGTAGAGCTCTTCGAGGTCTCGCA-CTATCTCCT 16801051 >seq13 Length=41232431 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| |||||||| | || |||||||| ||| | | || Sbjct 33073733 TCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTTCCAAGCAGG 33073674 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| |||||| ||||| |||| ||| | |||||||| || || |||||| ||| Sbjct 33073673 CCTTTCAGGGAAAATGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATGGCATTAGGA 33073614 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 || | ||| || | || | ||| | ||| | || | || || | ||| || |||| Sbjct 33073613 CGGGATTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCACCGTAGACC 33073554 Query 9143 GCTTCCAA--CTCGGCAGCTATCTC 9165 |||| || ||||| ||||| || Sbjct 33073553 TCTTCTAAACCTCGG--GCTATTTC 33073531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723704777377800