Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq15 172 7e-38 seq11 86.0 8e-12 seq16 84.2 3e-11 seq21 82.4 9e-11 >seq15 Length=39264731 Score = 172 bits (190), Expect = 7e-38 Identities = 830/1297 (64%), Gaps = 26/1297 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 17054802 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 17054861 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || || ||| Sbjct 17054862 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 17054921 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 || || | |||||| | | | ||| | ||||||||| || |||| || Sbjct 17054922 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGA 17054981 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || || | | | ||||| || ||| | |||||||| | ||| | | |||| Sbjct 17054982 ATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTAGCTCGGCAGCCAGC 17055041 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| ||||||| || | || || | || ||||||||||| || | || | || Sbjct 17055042 TCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGA--GCA 17055099 Query 116203 -TTG-GCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCT 116259 ||| |||||| | ||||| | || | ||| | || || |||| || | || Sbjct 17055100 GTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATGAGGATGAAGGCATCAGCCAATCCC 17055158 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 116319 ||||| |||| || || || | || | ||| || ||| | | || ||||| || Sbjct 17055159 TGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG 17055218 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || | || | ||||||||| | || | || || | || || || | | ||| Sbjct 17055219 TAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGT-ATGC 17055277 Query 116380 -AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438 || |||| | ||| || | || ||| |||| ||| | || ||||| || Sbjct 17055278 CAGTTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATAGA 17055334 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 |||||||| || || | ||| ||||| ||||||||| | |||||||| || | Sbjct 17055335 GGCCAGATTGCAGACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAG 17055394 Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 || | ||| |||||||||| |||| || || ||| |||| || || || || Sbjct 17055395 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 17055454 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT- 116617 ||||| ||| || |||||||| || || || || |||| || || || | ||||| | Sbjct 17055455 GTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG 17055514 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCT 116677 | | | || || || || | | ||||||| ||| || | |||||||| | | Sbjct 17055515 CTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTT 17055573 Query 116678 CAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 ||||||| || ||| |||| ||| || || || | |||| || | || ||| Sbjct 17055574 CAAACTCCTCCCCC-CAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGAC 17055632 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || | | | ||| |||||||||||||||||||| |||||||| || || |||| Sbjct 17055633 CAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAC 17055692 Query 116797 AGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 116855 || |||| || ||| || | | ||| || || || ||||| ||||| | Sbjct 17055693 AGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAA 17055751 Query 116856 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGACCAG 116911 | ||| |||||| || |||||||||| |||| | || ||| | | || Sbjct 17055752 CACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCC- 17055810 Query 116912 CCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAG 116971 |||| | ||||||| || || ||| | || | | |||||| | | || | | Sbjct 17055811 CCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGG 17055870 Query 116972 ATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGA--CATCGTGGATGTGCAT 117029 | ||| || || || ||| | ||| ||||| || | || || || Sbjct 17055871 AACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGC-TGACTGC-CAC 17055928 Query 117030 ACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCC 117089 ||||| || || || | || ||||| | ||||| | | | || || |||||||||| Sbjct 17055929 GCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCC 17055988 Query 117090 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 117149 || || |||| |||| | |||| ||||||||||| |||| || ||||| || Sbjct 17055989 CTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 17056048 Query 117150 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||| ||||||||||| || | |||||| ||||| Sbjct 17056049 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC 17056085 >seq11 Length=32426571 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||| ||| | | ||||||| || |||| ||| ||||| ||||| Sbjct 23759211 TAGATGTTGCTGGTGTATGCCTCGATGGACTCATTATTGCCCAGGATCTGGGCAGTGGAA 23759152 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| || ||||| || Sbjct 23759151 GCTGTGGGCATTGGGGCCAAAAGCAGGCTATT 23759120 >seq16 Length=36154882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | |||| Sbjct 10883206 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTTTTCT 10883147 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || || || ||||| |||||||||||||||||||| Sbjct 10883146 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCAC 10883098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | |||| Sbjct 10897272 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTTTTCT 10897331 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || || || ||||| |||||||||||||||||||| Sbjct 10897332 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCAC 10897380 >seq21 Length=37011614 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||||| || || ||| || || || ||||| || |||| ||||| Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||| |||| | || ||| |||||| |||||||||||||| || |||||| Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 18722743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487514087720