Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq15 158 2e-33 >seq15 Length=39264731 Score = 158 bits (174), Expect = 2e-33 Identities = 343/508 (68%), Gaps = 4/508 (1%) Strand=Plus/Plus Query 204103 GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCT 204162 ||| || || |||| || ||||| || || ||||||| ||||| |||| | Sbjct 17054678 GATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCTCTC 17054737 Query 204163 GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCG 204222 |||| || | |||||||||||||| ||||||||| || || || ||||||| || Sbjct 17054738 CGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCG 17054797 Query 204223 GGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGT 204282 |||| | | |||| | ||| | | |||| | |||||||||||| | ||||| ||||| Sbjct 17054798 GGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGT 17054857 Query 204283 GCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCT 204342 | |||||||||||| || ||||| |||||| ||| | ||| || | ||| || | | Sbjct 17054858 GGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTT 17054917 Query 204343 GCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTG 204402 |||||| ||||||| || | | || || ||||||||||| |||| Sbjct 17054918 CTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTACTG 17054977 Query 204403 AAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAG-GCTGATCCTCTTCTG 204461 || ||||| | ||| || || ||| | |||||| ||| | || | ||| | | Sbjct 17054978 AAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTA-GCTCGGCAG 17055036 Query 204462 CCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTA 204521 |||||| ||| || ||| ||| |||||| || |||||||||||||| | | || Sbjct 17055037 CCAGCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATG-TTG 17055095 Query 204522 ATCTGGCG-GCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAG 204580 | | | | ||||| | | ||||| | || || | | || | || ||||| Sbjct 17055096 AGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATGAGGATGAAGGCATCAGCCAAT 17055155 Query 204581 CCCTGCACTCCGATTCCCAACGGTCTGT 204608 ||||| || |||||||| | ||| |||| Sbjct 17055156 CCCTGGACCCCGATTCCTATCGGCCTGT 17055183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795129685457520