Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1437 140 8e-28 >seq1437 Length=1065406 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 779113 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 779172 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||| ||||| || ||| ||||| || Sbjct 779173 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTC 779232 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| ||| || || |||| ||||| || Sbjct 779233 CTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGT 779292 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 779293 CTTGCCAGTGAGGGTTTTCACAAAGATCTG 779322 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 749349 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 749408 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 749409 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 749468 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| ||| || || |||| ||||| || Sbjct 749469 CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGT 749528 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 749529 CTTGCCAGTGAGGGTCTTCACGAAGATCTG 749558 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 777975 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 778034 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| || || || Sbjct 778035 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATC 778094 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| ||| || | |||||| ||| || || |||| ||||| || Sbjct 778095 CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGT 778154 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || |||||||| || || Sbjct 778155 CTTGCCAGTGAGGGTCTTCACAAAGATCTG 778184 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 778657 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 778716 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| || || || Sbjct 778717 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATC 778776 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| ||| || | |||||| ||| || || |||| ||||| || Sbjct 778777 CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGT 778836 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 778837 CTTGCCAGTGAGGGTCTTCACGAAGATCTG 778866 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 778885 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 778944 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| || || || Sbjct 778945 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATC 779004 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| ||| || | |||||| ||| || || |||| ||||| || Sbjct 779005 CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGT 779064 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || |||||||| || || Sbjct 779065 CTTGCCAGTGAGGGTCTTCACAAAGATCTG 779094 Score = 132 bits (146), Expect = 1e-25 Identities = 156/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 749577 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 749636 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 749637 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTTATC 749695 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| ||| || || |||| ||||| || Sbjct 749696 CTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGT 749755 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 749756 CTTGCCAGTGAGGGTCTTCACGAAGATCTG 749785 Score = 132 bits (146), Expect = 1e-25 Identities = 156/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 778203 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 778262 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| || || || Sbjct 778263 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATC 778322 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| ||| || | |||||| ||| || || |||| ||||| || Sbjct 778323 CTGGAT-TTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGT 778381 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || |||||||| || || Sbjct 778382 CTTGCCAGTGAGGGTCTTCACAAAGATCTG 778411 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| || || |||||||| |||| ||||||||| | | || | ||||| Sbjct 749804 CAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 749863 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || || || || | ||||||||| || ||| ||||| || Sbjct 749864 TTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 749923 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || |||| |||||| ||| || || |||| ||||| || Sbjct 749924 CTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGT 749983 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 749984 CTTGCCAGTGAGGGTTTTCACAAAGATCTG 750013 Score = 127 bits (140), Expect = 5e-24 Identities = 155/210 (74%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||||||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 778430 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 778489 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| || || || Sbjct 778490 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCCTCCTTATC 778548 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| ||| || || |||| ||||| || Sbjct 778549 CTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGT 778608 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 778609 CTTGCCAGTGAGGGTCTTCACGAAGATCTG 778638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178882825636989