Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1437 131 2e-25 >seq1437 Length=1065406 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||||| Sbjct 749788 TGCCACCCCTGAGACGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 749847 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || ||||||| | ||||||||| | | Sbjct 749848 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGG 749907 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| ||| || ||||| || | | ||||| || | || | Sbjct 749908 GAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTTGGCTCAA 749967 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | |||| |||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 749968 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 750019 Score = 131 bits (144), Expect = 2e-25 Identities = 172/237 (73%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 779097 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 779156 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||| ||||| | | Sbjct 779157 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGG 779216 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || ||||| || | | |||||||| | || | Sbjct 779217 GAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAA 779276 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCAC 46600 | |||| |||||||| ||||| || || ||||| |||||||| ||||| ||||||| Sbjct 779277 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTTTGCAC 779333 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||||| Sbjct 778869 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 778928 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 778929 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 778988 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| ||| || ||||| || | | |||||||| | || | Sbjct 778989 GAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAA 779048 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || |||||||| ||||| Sbjct 779049 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 779097 Score = 125 bits (138), Expect = 8e-24 Identities = 166/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||||| Sbjct 778187 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 778246 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 778247 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 778306 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| ||| || ||||| || | | |||||||| | || | Sbjct 778307 GAATGCCCTCCTTATCCTGGAT-TTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAA 778365 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || |||||||| ||||| Sbjct 778366 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 778414 Score = 122 bits (134), Expect = 1e-22 Identities = 183/258 (71%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 46336 AAATTAAAACATTTGTGTACTATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAA 46395 |||| |||||||| | | ||| ||||| ||| || || | ||||| || || || | Sbjct 749308 AAATAAAAACATT---GAATTAT-TTATTGGCCACCCCTGAGACGCAGGACAAGGTGGAG 749363 Query 46396 TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 || |||||| ||||| |||||||| || || ||||| | || || ||||||||||| Sbjct 749364 GGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCC 749423 Query 46456 GGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 || || |||| | ||||||||| | || | || ||||| ||| ||| || ||| Sbjct 749424 AGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTT 749483 Query 46516 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 || || | | ||||| || | || || |||| |||||||| ||||| || || || Sbjct 749484 GACATTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGT 749543 Query 46576 TTTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 749544 CTTCACGAAGATCTGCAT 749561 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || ||||||||||| || || Sbjct 777996 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 778055 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||||| ||| ||| || ||||| | Sbjct 778056 GATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 778115 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || |||| |||||||| ||||| || || || || || Sbjct 778116 CTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 778175 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 778176 AAAGATCTGCAT 778187 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 778641 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 778700 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 778701 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 778760 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| ||| || ||||| || | | |||||||| | || | Sbjct 778761 GAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAA 778820 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 778821 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 778869 Score = 116 bits (128), Expect = 4e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 778414 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 778473 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 778474 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG-GG 778532 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||| ||| ||| || ||||| || | | |||||||| | || | Sbjct 778533 GAATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAA 778592 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 778593 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 778641 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| || || || | || |||||| ||||| |||||||| | Sbjct 749561 TGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 749620 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 749621 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG-GG 749679 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| ||| ||| || ||||| || | | ||||| || | || | Sbjct 749680 GAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAA 749739 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| || || || || || ||||| ||||| Sbjct 749740 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 749788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565220262912840