Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq20 170 8e-37 >seq20 Length=36767035 Score = 170 bits (188), Expect = 8e-37 Identities = 461/698 (66%), Gaps = 7/698 (1%) Strand=Plus/Plus Query 450910 AGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGG 450969 |||| | ||||| |||||||| |||||||||| ||| ||||| || |||| ||| |||| Sbjct 23816476 AGTATCCATTGGCATTGATCTGGGAACCACCTATTCTTGTGTTGGGGTTTTCCAGCATGG 23816535 Query 450970 AAATGTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGTT 451028 || || || || || || || || || || | || |||| ||||| | || || Sbjct 23816536 CAAAGTTGAGATCATTGCCAACGATCAGGGCAACA-GAACCACTCCAAGCTATGTGGCTT 23816594 Query 451029 TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCC 451087 |||| || ||||||| ||| | || | ||||| || | | | | | | | || || Sbjct 23816595 TTACTGACACAGAAAGGCTTATTGGAGATGCTGCCAAGAACCAAGTTGCAATGAACC-CC 23816653 Query 451088 AAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTA 451147 || |||||| | | |||||| ||||| | ||||| | | || | |||| ||| Sbjct 23816654 AATAACACAATCTTTGATGCCAAACGGCTGATTGGAAGAAAGTTTAATGACCCAGTCGTA 23816713 Query 451148 CAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || || | || ||| ||| | || | | | || ||||||||| | | Sbjct 23816714 CAGTCCGACATGAAGCTCTGGCCTTTCAAGGTGATTGACGATAATGGAAAGCCCAAAGTC 23816773 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 || || | || ||||| || || || | || |||||| |||||||| || ||||| Sbjct 23816774 CAGGTGGAATACAAAGGGGAGACCAAGGCATTCTATCCTGAGGAAATTTCCTCCATGGTC 23816833 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 || ||||||||| || | ||| || || | || || | ||||||| Sbjct 23816834 CTGGTTAAAATGAAGGAGATAGCTGAGGCCTACCTGGGACAAAGGGTGTCAAATGCAGTC 23816893 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 || || || || ||||||||||| || | || | ||||| || || ||||| || Sbjct 23816894 ATCACAGTGCCAGCTTATTTCAACGACTCCCAGAGACAAGCTACCAAGGATGCTGGGGTG 23816953 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 || |||| ||||||||||| | || |||||||| || |||||||| || | ||||| Sbjct 23816954 ATCTCTGGACTAAATGTTCTTAGGATCATTAATGAGCCCACAGCAGCAGCCATTGCATAC 23817013 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || || ||| || | |||||| |||| ||| | | | |||||| |||| ||| Sbjct 23817014 GGCCT-GGATAA--AGGCAAAACAGGAGAACGCAATGTGCTGATCTTTGATCTTGGCGGA 23817070 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || || |||| ||| | || | ||||||||||| | ||||| || || || || Sbjct 23817071 GGCACCTTTGATGTGTCTATTCTGACCATTGAAGATGGCATCTTTGAGGTCAAAGCCACT 23817130 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || || || || || || || |||| || Sbjct 23817131 TCAGGAGACACACACCTTGGTGGGGAGGACTTTGACAA 23817168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975653419239236