Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq20 322 4e-82 seq15 93.3 3e-13 >seq20 Length=36767035 Score = 322 bits (356), Expect = 4e-82 Identities = 954/1454 (66%), Gaps = 18/1454 (1%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 ||||| ||||| || |||||||| | |||||||| || || || || || || |||| Sbjct 23817927 ACATTTAGAATGCCGTTGGCATCTACGTCAAATGTTACCTCTATCTGTGGAACACCTCGG 23817868 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 |||| || ||||| ||| | | |||| | || ||| || || ||||| || | Sbjct 23817867 GGAGCTGGAGGGATACCTGTGAGGTCAAATTTGCCAAGAAGGTTGTTGTCTTTGGTCATG 23817808 Query 517385 TTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 || ||||| || || | || || |||| | | | || |||||||| || || | Sbjct 23817807 GCTCTCTCACCTTCAAATACCTGAATCAGTA-CACCTGGCTGGTTATCTGAGTATGTGGA 23817749 Query 517444 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 || | |||| | | || || ||||| ||||||| | || | | ||||||| Sbjct 23817748 GAAGA-TCTGAGTCTGCTTTGTGGGGATTGTGGTGTTTCGCTTTATCAGAGGTGTCATAA 23817690 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 517562 ||| ||||| ||||||| || ||||| || |||| ||||| | || | | || || Sbjct 23817689 CACCGCCTGCGGTTTCTATGCCCAGAGACAGGGGAGCCACATCCAGCAGCAGCAGATCTT 23817630 Query 517563 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 | | || || || | || | || ||||||||||| | || ||||| || || | Sbjct 23817629 GGACATTCTCTGAGGTGTCGCCCATGAGGATAGCTGCTTGGACTGCTGCACCGTAGGCTA 23817570 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 517681 |||||||||| || |||| | | || || | ||| || || || || | || |||| Sbjct 23817569 CAGCTTCATCTGGGTTAATGCTCTTGTTCAGGTCTTTGCCGTTAAAGAAGTCCTGTAAGA 23817510 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA-CCTG 517740 || | | || ||||| | | || || || || | ||||||||||| | |||| Sbjct 23817509 GCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCGACCAGGACAATTTCATGAATCCTG 23817451 Query 517741 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA--GACCCGCTCTA 517798 ||||||||||| || | |||| | |||| ||||| || |||| | || || | Sbjct 23817450 -GATTTATCCAGCTTGGCATCCTGCAGGGCTTTCTCAACTGGGTCAACTGTTCCCCTGAA 23817392 Query 517799 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 517858 || | ||||| || || || || || || || | | | | | |||||||| Sbjct 23817391 AAGA--TCTGAGTTGAGCTCCTCAAAACGTGCCCTTGTGATGGAGGTGTAAAAATCAATT 23817334 Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 517918 || || || | ||| |||| ||||| | | ||||| || |||| | | || Sbjct 23817333 CCCTCAAAGAGAGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGATAAGGTCCTCTTT 23817274 Query 517919 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTT 517978 || | ||||| ||||| | ||||| | | ||| | || ||| | ||| | | Sbjct 23817273 GCCCTCTCACAAGCTGTACGCAGTCTCCTCACTGCTCT--CTTATTCTGGCTAATGTCCT 23817216 Query 517979 T--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 | ||| |||||| || || || || ||| | | || | | || ||||| || | Sbjct 23817215 TCTTATGTTTTCTTTTAAATTCCTCTACAAAGTGCTTGACCATTTGGTTGTCAAAGTCCT 23817156 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 | || || | | || | |||||| || ||| | || | || | |||||||||| | Sbjct 23817155 CCCCACCAAGGTGTGTGTCTCCTGAAGTGGCTTTGACCTCAAAGATGCCATCTTCAATGG 23817096 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 || || || |||||| ||| || || || | |||||| || || ||||| |||| Sbjct 23817095 TCAGAATAGACACATCAAAGGTGCCTCCGCCAAGATCAAAGATCAGCACATTGCGTTCTC 23817036 Query 518157 -TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| ||| ||| ||| || || || |||| || || || || || |||||||| || Sbjct 23817035 CTGTTTTGCCTTT-ATCCAGGCCGTATGCAATGGCTGCTGCTGTGGGCTCATTAATGATC 23816977 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 || | |||||| || |||| || || ||||| || || |||||||| || || ||| Sbjct 23816976 CTAAGAACATTTAGTCCAGAGATCACCCCAGCATCCTTGGTAGCTTGTCTCTGGGAGTCG 23816917 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 || ||||| || || || || || || |||| | || || || | || || Sbjct 23816916 TTGAAATAAGCTGGCACTGTGATGACTGCATTTGACACCCTTTGTCCCAGGTAGGCCTCA 23816857 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 || | | ||||||||| | | ||| || ||||||| || || | || |||| Sbjct 23816856 GCTATCTCCTTCATTTTAACCAGGACCATGGAGGAAATTTCCTCAGGATAGAATGCCTTG 23816797 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 | || || ||| || | | | || || | | | | ||| || || || Sbjct 23816796 GTCTCCCCTTTGTATTCCACCTGGACTTTGGGCTTTCCATTATCGTCAATCACCTTGAAA 23816737 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 |||||| ||||| || || || || | |||||||||| | ||| ||||| | ||| Sbjct 23816736 GGCCAGAGCTTCATGTCGGACTGTACGACTGGGTCATTAAACTTTCTTCCAATCAGCCGT 23816677 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || |||||||| || || || | || || |||||| |||| | ||||| ||||||||| Sbjct 23816676 TTGGCATCAAAGATTGTGTTATTGGGGTTCATTGCAACTTGGTTCTTGGCAGCATCTCCA 23816617 Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 || || |||||| || ||||| | ||||| |||||| || | || || ||||| Sbjct 23816616 ATAAGCCTTTCTGTGTCAGTAAAAGCCACATAGCTTGGAGTGGTTCTGTTGCCCTGATCG 23816557 Query 518636 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 518695 || ||||| || |||||||| |||| || | || || |||||| | | || ||||| Sbjct 23816556 TTGGCAATGATCTCAACTTTGCCATGCTGGAAAACCCCAACACAAGAATAGGTGGTTCCC 23816497 Query 518696 AAATCAATACCAAT 518709 | |||||| ||||| Sbjct 23816496 AGATCAATGCCAAT 23816483 >seq15 Length=39264731 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| |||||||| || || || || || || | | ||| Sbjct 14803007 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCGGTGGGCTCGTTGATGATACGAAGGACA 14803066 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | ||||||||||| ||||| || | || || ||||| || || Sbjct 14803067 TTAAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTGAAGTAG 14803126 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| ||||| | |||||| ||||| Sbjct 14803127 GCAGGCACAGTCACTACGGCACTTGTTAC 14803155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780695017004302