Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq15 140 4e-28 seq11 95.1 2e-14 >seq15 Length=39264731 Score = 140 bits (154), Expect = 4e-28 Identities = 936/1485 (63%), Gaps = 30/1485 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||| |||| || | || ||||| ||| ||||| || | | Sbjct 17056177 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATATCGAAGCGGCC 17056118 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | |||| | || ||||| |||||| | || |||||||| Sbjct 17056117 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 17056059 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| ||||| || || || || ||||||| || ||||| | || | ||||| || Sbjct 17056058 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 17055999 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || |||| ||| || | | || |||| ||||| || | || || Sbjct 17055998 CAGCATTGAGGGGATCTACGACACACTGAAGCATTGCGCCCTCATCTCCAAATCAGCCGG 17055939 Query 111851 TGGTATCGGGATGCACATCCATGATG--TCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 || || || || || || | || ||||| ||| | ||| || || Sbjct 17055938 AGGGATTGGCGTGG-CAGTCA-GCTGCATCAGATCCACGGGGAGCTACATTGCCGGCACC 17055881 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | || || | |||||| | | || | ||| |||||| || ||| Sbjct 17055880 AACGGCTGTTCCAACGGGCTTGTCCCAATGTTGAGGGTGTACAACAACACAGCACGGTAT 17055821 Query 111969 GTAAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCA 112024 || | || | |||| | ||| || | |||| | || || ||||| ||||| Sbjct 17055820 GTTGATCAGGG-GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCA 17055762 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 | ||| | | || ||||| ||| || ||| || | |||||| ||| Sbjct 17055761 CTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGC 17055702 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 | | || || |||| ||| || ||||| || || |||||||||||| | || ||| | | Sbjct 17055701 CAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAA 17055642 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTG 112203 | | ||||| || | || |||| | | ||||| || || ||| | ||| | Sbjct 17055641 CGAAGACTGGTCCCTGATGTGCCCAGCCGACTGCCCCGGACTGGATGAGTGCTGGGGG-G 17055583 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC-GGTG 112262 |||||||||||| |||||||| | || ||| || | ||| || ||| |||| Sbjct 17055582 AGGAGTTTGAAGAACTCTACACCAGATATGAGAGGGAGGGGAGGGTGAA-GCGTGTGGTG 17055524 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 ||| | | ||| | || || || |||| || || || ||||| || || || Sbjct 17055523 AAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACTGGGACGCCGTAC 17055464 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||| | |||||||||||||| ||| ||||| || || ||||| |||| |||||| Sbjct 17055463 ATGGTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAG 17055404 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | |||||| || || |||||| | || | || ||| || ||| ||| || || Sbjct 17055403 TGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTCTGC 17055344 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 || || || || ||||||||| || ||| || || ||| ||| | ||| | | Sbjct 17055343 AATCTGGCCTCTATCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACTTT 17055287 Query 112503 GAAAAACTCCACGAAGTTACGAA---AACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 ||||||| | || || || || |||| | ||| | |||| ||||| || Sbjct 17055286 AAAAAACTGGCATACGTGACCAAAGTAATTGTC---AGGAACTTGAACAAGGTTATCGAC 17055230 Query 112560 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 | || | ||||| || || || | | || || ||| | ||| | || || || Sbjct 17055229 ATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATAGGA 17055170 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 |||| ||||| || | || |||| ||||| || || | | ||||| | | Sbjct 17055169 ATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTCATGCGTTATCCCTTTGAAAGCCCC 17055110 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || | |||| | || ||||||||||| || | |||||| | || ||| Sbjct 17055109 GAGGCTCAACTGCTCAACATCCAGATCTTTGAGACAATCTACTATGCCGCTTTGGAAGCG 17055050 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 || | ||| |||| | | || | ||||| || | ||| || || || | | Sbjct 17055049 AGCTGCGAGCTGGCTGCCGAGCTAGGCACCTATGAGACGTATGAAGGCTCGCC-GGTGAG 17054991 Query 112800 CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGG 112857 ||||| | ||||| | || ||||||| || || |||| | | | |||| || Sbjct 17054990 TAAGGGCATTCTTCAGTACGACATGTGGG-AGAAGACTCCAACGGACCTGTGGGACT-GG 17054933 Query 112858 ACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 112916 | ||| || ||||| ||| | | || | | ||||| || || |||| || Sbjct 17054932 AAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGGCCCCG 17054873 Query 112917 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976 ||||| || ||||||||||| || ||| |||| || || || | | | || ||||||| Sbjct 17054872 ATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACA 17054813 Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036 | |||||||| | | ||| |||| |||||| ||| |||||| || || Sbjct 17054812 AGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCTG 17054753 Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 | | ||||| | |||| || || ||| |||| |||||| Sbjct 17054752 CTCAAAGACCTGACGGAGAGGGGCCTGTGGAATGAGGAGATGAAG 17054708 >seq11 Length=32426571 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 112276 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAG 112335 ||||| | || || | |||| || || || |||||||||||||||||||||||||| | Sbjct 23758118 TGTGGTATGCCATCATTGAGTCGCAGACAGAAACTGGTACACCATATATGCTTTACAAGG 23758177 Query 112336 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCT 112395 ||||||| ||| ||||||||||| | ||| |||| ||||| ||| || | Sbjct 23758178 ACGCCTGCAACAGGAAGAGTAATCAGCAAAATCTGGGCACCATCAAATCCAGCAATCTGT 23758237 Query 112396 GTACAGAAATCTTGGAATTTACAGACAAAGATGAG 112430 | ||||| ||| | || | ||| |||||||||| Sbjct 23758238 GCACAGAGATCGTAGAGTACACAAGCAAAGATGAG 23758272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722481928240