Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq15 201 1e-46 seq21 82.4 9e-11 seq11 82.4 9e-11 >seq15 Length=39264731 Score = 201 bits (222), Expect = 1e-46 Identities = 953/1487 (64%), Gaps = 48/1487 (3%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| ||| || || ||| | | || || |||| || || |||||| Sbjct 17054708 CTTCATCTCCTCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGAC 17054767 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||| |||| ||| | | |||||||| | ||||||| || | Sbjct 17054768 GATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGAT 17054827 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 17054828 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 17054887 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 ||||| | | || | || ||| ||||| || | | |||||| | | Sbjct 17054888 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 17054947 Query 106081 C-TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | |||| || || ||||||| || | ||||| | || | | || || || | Sbjct 17054948 CGTTGGAGTCTTCT-CCCACATGTCGTACTGAAGAATGCCCTTACTCACCGGCGAGCCTT 17055006 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 106199 || | |||||||||| ||| | | |||||| || |||||||| |||| | || | Sbjct 17055007 CATACGTCTCATAGGTGCCTAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCAT 17055066 Query 106200 GATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAATC 106251 || || || |||||||| | |||| || | | | ||||| || Sbjct 17055067 AGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTT--------TC 17055118 Query 106252 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 106311 ||| | || || | || || |||| || | || || || || | || || || Sbjct 17055119 AAAGGGATAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGG 17055178 Query 106312 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGAC 106371 ||||| ||||| || ||| | | || || || || || | || |||| || || Sbjct 17055179 CCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAAC 17055238 Query 106372 TCGGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGA-AGTTTTTCATAATCAA 106427 ||| | || || ||||| ||||| | | | ||| ||||||| | | ||| Sbjct 17055239 CTTGTTCAAGTTCCTG---ACAATTACTTTGGTCACGT-ATGCCAGTTTTTTAAAGTCAT 17055294 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 |||| || ||| |||| ||| | || ||||| || |||| |||||| || | Sbjct 17055295 AAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCG 17055351 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 || ||| ||||| |||||||| | ||||| || || | |||| | ||| || | Sbjct 17055352 CCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGG 17055411 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | |||| ||||| ||||| ||||| ||||||| || || ||||||| |||||| |||| Sbjct 17055412 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCG 17055471 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATG 106666 |||| || || ||||| |||| || ||||| | ||| | | | | | || || Sbjct 17055472 TCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACAC 17055531 Query 106667 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 106726 || || ||| |||||| ||| || | |||||||| ||||||||||||| ||| | Sbjct 17055532 GC-TTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCC-CA 17055589 Query 106727 GCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTC 106785 || || || || || | | |||| || | || ||||| | | | ||| Sbjct 17055590 GCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTC 17055649 Query 106786 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 106845 |||||||||||||| ||||| || |||||||||| | || || || || || Sbjct 17055650 CACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTG 17055709 Query 106846 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 106904 ||| || | || ||| || | | ||| ||||| || | | ||| |||||| | Sbjct 17055710 CTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGG 17055768 Query 106905 GCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGC 106960 |||| || || | |||| | || |||| | |||| | |||| ||||| || Sbjct 17055769 GCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCC-CCCTGATCAACATACCGT 17055827 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 |||||| ||| | || | | |||||| | || || | || || || || || Sbjct 17055828 GCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCG 17055887 Query 107021 CGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCC 107077 ||| || | ||| ||| | || | || || || ||||| || || || Sbjct 17055888 GCAAT-GTAGCTCCCCGTGGATCTGATGCAGC-TGACTG-CCACGCCAATCCCTCCGGCT 17055944 Query 107078 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 107137 | || ||||| | || || | | | || || | ||||| || | || ||| ||| Sbjct 17055945 GATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCC 17056004 Query 107138 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 107197 || |||||| |||||||| ||||||| |||||| || || ||||||||||||||| Sbjct 17056005 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGG 17056064 Query 107198 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 107256 || || | ||||| ||||| || | | |||| | || ||| ||||| | | | | Sbjct 17056065 GTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGC 17056123 Query 107257 ATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || ||||||||| || | ||||| | ||| | ||||| Sbjct 17056124 TTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGT 17056170 >seq21 Length=37011614 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 |||| || | | ||| || || || ||| || ||||| ||||| || |||| ||||| Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 ||| ||| || ||||| ||| ||||| || ||||||||||| || |||||| ||||| Sbjct 18722792 TCAGCCAGTAGATAGCAGCA-AATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAA 18722734 Query 117412 GCAAAAAGGCGCTC 117425 || | || ||||| Sbjct 18722733 GCCACAATCCGCTC 18722720 >seq11 Length=32426571 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || ||||||||||| || ||||| |||| ||| || || || || Sbjct 23758272 CTCATCTTTGCTTGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCC 23758213 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | || |||||||| ||||||| || |||||||| ||||| || || || || Sbjct 23758212 CAGATTTTGCTGATTACTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATATATGGTGTACC 23758153 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || || ||||| |||| | || || | ||||| Sbjct 23758152 AGTTTCTGTCTGCGACTCAATGATGGCATACCACA 23758118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961868991080