Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1437 140 7e-28 >seq1437 Length=1065406 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||||||| |||||||| || || || ||||| |||| || || Sbjct 749796 CTGAGACGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 749855 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || || || || | || ||||| || ||||||||| Sbjct 749856 CGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATGCCT 749915 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || || || || ||||| |||||| ||||| |||||||| |||| || || || Sbjct 749916 TCCTTATCCTGGATTTTGGCCTTGACATTCTCGATGGTGTC---ACTTGGCTCAACCTCC 749972 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | ||||| || || | ||||| Sbjct 749973 AGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 750016 Score = 140 bits (154), Expect = 7e-28 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| || | || || Sbjct 779105 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 779164 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | |||||||| || ||||||||| Sbjct 779165 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCT 779224 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || ||||| || ||||| |||||| |||||||||||||| ||| || || || Sbjct 779225 TCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC---GCTTGGCTCAACCTCC 779281 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | ||||| || || | ||||| Sbjct 779282 AGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 779325 Score = 134 bits (148), Expect = 3e-26 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| || | || || Sbjct 749341 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 749400 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || ||||||||| Sbjct 749401 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 749460 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || || || || ||||| |||||| |||||||||||||| |||| || || || Sbjct 749461 TCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTTGGCTCAACCTCC 749517 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || ||||| | ||||| Sbjct 749518 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 749561 Score = 134 bits (148), Expect = 3e-26 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| |||| || || Sbjct 777967 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 778026 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || |||||||| Sbjct 778027 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCC 778086 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || || || || ||||| ||||||||||||||||||||| |||| || || || Sbjct 778087 TCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTTGGCTCAACCTCC 778143 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || || || | ||||| Sbjct 778144 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 778187 Score = 131 bits (144), Expect = 4e-25 Identities = 165/224 (74%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| || | || || Sbjct 749569 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 749628 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || ||||||||| Sbjct 749629 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCT 749687 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || || || || ||||| |||||| |||||||||||||| |||| || || || Sbjct 749688 TCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC---ACTTGGCTCAACCTCC 749744 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || ||||| | ||||| Sbjct 749745 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 749788 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| || | || || Sbjct 778649 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 778708 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || |||||||| Sbjct 778709 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCC 778768 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || || || || ||||| ||||||||||||||||||||| ||| || || || Sbjct 778769 TCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCC 778825 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || ||||| | ||||| Sbjct 778826 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 778869 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| |||| || || Sbjct 778877 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 778936 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || |||||||| Sbjct 778937 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCC 778996 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || || || || ||||| ||||||||||||||||||||| ||| || || || Sbjct 778997 TCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCC 779053 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || || || | ||||| Sbjct 779054 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 779097 Score = 122 bits (134), Expect = 2e-22 Identities = 163/224 (73%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| |||| || || Sbjct 778195 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 778254 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || |||||||| Sbjct 778255 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCC 778314 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || || || || |||| ||||||||||||||||||||| ||| || || || Sbjct 778315 TCCTTATCCTGGATTTGGC-CTTGACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCC 778370 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || || || | ||||| Sbjct 778371 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 778414 Score = 122 bits (134), Expect = 2e-22 Identities = 163/224 (73%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || |||||||| || |||||||| || || || ||||| || | || || Sbjct 778422 CTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 778481 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || ||||| || |||||||| Sbjct 778482 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCC 778540 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCA 195096 || || || || ||||| |||||| |||||||||||||| ||| || || || Sbjct 778541 TCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC---GCTTGGCTCAACCTCC 778597 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | || || ||||| | ||||| Sbjct 778598 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 778641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109445109496889