Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15 111 2e-19 seq11 100 3e-16 seq21 84.2 2e-11 >seq15 Length=39264731 Score = 111 bits (122), Expect = 2e-19 Identities = 598/950 (63%), Gaps = 8/950 (1%) Strand=Plus/Plus Query 47874 TTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTA 47931 || || || ||||| || ||||| || || || ||||| | ||| |||| || | | Sbjct 17055321 TTGAGAGCGATAGAGGCCAGATTGCAGACCGCCACCTCGTCCTTGC--TAGTGTACTCGA 17055378 Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991 ||||| | || || || | || ||||| || |||| ||| || || || | Sbjct 17055379 CGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCC 17055438 Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051 |||| || ||||| ||||| | ||| | || || ||||||||| |||| || || |||| Sbjct 17055439 TGTTGCAGGCGTCTTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGA 17055498 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACA-GCTCTAGCTTTATTATCATGTTCGTAT 48110 | | | ||| | | |||||| | ||| ||| | | | | | | | ||| Sbjct 17055499 TTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCT-CATAT 17055557 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCATT 48169 | || || | | ||||| || ||||| | ||| | ||| | || || || || Sbjct 17055558 CTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCAC-TCATCCAGTCCGGGGCAGTCGGC 17055616 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 || ||||||| ||||| || || | || | || | |||| || | || || || Sbjct 17055617 TGGGCACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGAT 17055676 Query 48230 CCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 ||| || || || | ||||| | || | || || || || | ||| | || || Sbjct 17055677 CCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAG 17055736 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || || ||||| | | |||| ||||| || || | || || || | | || || Sbjct 17055737 CTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGG 17055796 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || ||| || || || ||||| | ||| | || || ||||| || || || |||||||| Sbjct 17055797 TCTTTTGTTGCCCCCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGG 17055856 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 ||||| || || || || ||||| || | ||| || || || | | ||| || Sbjct 17055857 GACAAGCCCGTTGGAACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCA 17055916 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 || | || | || || || || || ||| || || || || || | || || || Sbjct 17055917 GCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGT 17055976 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 || || || || || || || ||||| |||| | || || || || |||| || Sbjct 17055977 GTCGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTG 17056036 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| ||||| | ||| || | || || || || || | ||||| |||||||| Sbjct 17056037 CGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGA 17056096 Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709 | || || || || || || | | || |||||| || || || | || || Sbjct 17056097 CAGCAGGTTGTAGGTCTCGATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCAC 17056156 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | ||| | ||| | || || | ||| | | |||| ||| || || | || || || Sbjct 17056157 CCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGA 17056216 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 |||| || || || ||||| |||| || || || || | |||| Sbjct 17056217 GCGCTCCAGAGTCTTGAAGCCAAAGAAGTTATAGGAGAAATCTCTGTCAT 17056266 >seq11 Length=32426571 Score = 100 bits (110), Expect = 3e-16 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 47907 ACCTCAT-TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965 ||||||| || | || || || | || || || | || ||||| | ||||||| || Sbjct 23758274 ACCTCATCTTTGCTT-GTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGT 23758216 Query 47966 ACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGT 48025 |||| |||||| |||||| | |||| || |||||||||||||||||| | ||||| Sbjct 23758215 GCCCAGATTTTGCTGATTACTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATATATGGTGT 23758156 Query 48026 TCCAGTTTCTATCTGAGATTCAATGAT 48052 ||||||||| |||| || |||||||| Sbjct 23758155 ACCAGTTTCTGTCTGCGACTCAATGAT 23758129 >seq21 Length=37011614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||| || || || | || || || | || | |||||||| || || || || | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||| | |||| ||||||||| ||||| ||||| || ||||| || |||||||||| Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 19103 CAAC 19106 | || Sbjct 18722732 CCAC 18722729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090763333880