Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq20 181 9e-40 seq12 107 2e-17 seq2040 87.8 1e-11 >seq20 Length=36767035 Score = 181 bits (200), Expect = 9e-40 Identities = 447/673 (66%), Gaps = 4/673 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || ||||| || || || || | || || | || || | ||||| | | ||||| | Sbjct 23817257 ACAGCTTGTGAGAGGGCAAAGAGGACCT-TATCCTCCAGCACTCAGGCAAGCATTGAGAT 23817315 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || || | |||||||||||||||| | | || | || | ||||| ||||| || Sbjct 23817316 TGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTTTTGAGGA 23817375 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || ||||| || || |||| |||| ||||| || ||| | ||| | Sbjct 23817376 GCTCAACTCAGATCTTTTCAGGGGAACAGTTGACCCAGTTGAGAAAGCCCTGCAGGATGC 23817435 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | |||||||||| | ||||||||||| || || ||||| || ||||||||||| Sbjct 23817436 CAAGCTGGATAAATCCAGGATTCATGAAATTGTCCTGGTCGGTGGCTCCACAAGAATTCC 23817495 Query 552152 TAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 ||||| | | | ||| || ||| ||| || || ||| | | || | || ||| Sbjct 23817496 CAAAATCCAGAAGCTCTTACAGGACTTCTTT-AACGGCAAAGACCTGAACAAGAGCATTA 23817554 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||| ||||| ||||| ||||| ||| | ||||||||||| || || | | Sbjct 23817555 ACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCTATCCTCATGGGCGACA 23817614 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 | || || | ||| || | | || | ||||| |||| || ||||| || ||| Sbjct 23817615 CCTCAGAGAATGTCCAAGATCTGCTGCTGCTGGATGTGGCTCCCCTGTCTCTGGGCATAG 23817674 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 |||| | || ||| ||||||| ||| || | |||| || || || || || Sbjct 23817675 AAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAATCCCCACAAAGC 23817734 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 | ||| | || || || || |||||||| || | | ||| ||||| | |||| Sbjct 23817735 AGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGTGTACTGATTCAGGTATTTG 23817794 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 |||| || ||| | || ||||| || || | ||||| | ||| | | ||||| Sbjct 23817795 AAGGTGAGAGAGCCATGACCAAAGACAACAACCTTCTTGGCAAATTTGACCTCACAGGTA 23817854 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | ||||| ||||| || || || || || || || || || || || | |||||||| | Sbjct 23817855 TCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGACGTAGATGCCAACG 23817914 Query 552571 GAATTTTGAATGT 552583 | ||| | ||||| Sbjct 23817915 GCATTCTAAATGT 23817927 >seq12 Length=36466354 Score = 107 bits (118), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | || || ||||| || || || || || || |||||||| || ||||||| Sbjct 26176251 ATGCAGTTGTCACAGTTCCAGCTTACTTCAACGATTCCCAGCGTCAAGCCACCAAAGATG 26176192 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| |||||||| || || || |||||||| ||||||||||| || Sbjct 26176191 CTGGGGCCATCTCTGGCCTTAATGTACTGCGCATCATCAATGAGCCTACTGCTGCAGCTA 26176132 Query 550518 TTGCATATGGACTTGATAA 550536 |||| |||||||| || || Sbjct 26176131 TTGCTTATGGACTGGACAA 26176113 >seq2040 Length=528324 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | ||||| ||| | || ||||| || ||||||||||| Sbjct 456256 ATGTCAAAGGGACCAGCAGTTGGTATTGATCTTGGGACCACCTACTCCTGTGTTGGTGTG 456315 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||||||||||||||||||||| || || ||||| || || || | Sbjct 456316 TTCCAGCATGGCAAAGTTGAAATTATTGCCAATGACCAGGGCAACAGGACCACACCCAGT 456375 Query 550097 TATGTTTCTTTCACGGAAACTGA 550119 ||||| | ||||| || || || Sbjct 456376 TATGTGGCCTTCACAGATACCGA 456398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029160245462830