Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq10 132 4e-26 seq13 105 5e-18 >seq10 Length=27519051 Score = 132 bits (146), Expect = 4e-26 Identities = 135/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| ||||| ||||| || || |||||||||||||| || ||||| ||||| ||||| Sbjct 14138927 CATGTCTGTGTATTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 14138986 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| || || | ||| || ||||||| ||||| | || |||||||| || Sbjct 14138987 ACCCTCCTCTCTATCAGTGAACCCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATC 14139046 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30323 ||||||||| || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 14139047 CCAGATCTTCACTCCTTTTTCTGATAGCTCCTTGGAATTTGTTGATCCCTGTGAC 14139101 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | ||| || |||||||| || || || || |||||||| ||||| || || Sbjct 14138113 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCAATGTTGAAAGGC 14138172 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| | ||||| || | || | |||||| ||||||||||| ||||| ||||||| | Sbjct 14138173 ACCCCTAATCCCATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 14138232 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || ||||| || | | |||||| || || || ||||| Sbjct 14138233 ACATAGAACTGGCAGAGTGCGTGGCAGGGGGGCAGCGCCAT 14138273 >seq13 Length=41232431 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||||||||||||||| | ||| || |||| |||||||||| ||||| || ||||| || Sbjct 2760030 CTCCCTGCTGAGGACAATGTTGATTCTGTTGCTCAGAGGTCGGTTCTTCTCTGGGATAGA 2759971 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 | |||| ||||| | ||||| |||||||| |||||||||||| Sbjct 2759970 GTACCACGTCTTCTTGCCCATGATCACCACATTCTGCTTGCCT 2759928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604816270691