Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15 248 2e-60 seq16 123 5e-23 seq21 111 3e-19 >seq15 Length=39264731 Score = 248 bits (274), Expect = 2e-60 Identities = 808/1232 (66%), Gaps = 40/1232 (3%) Strand=Plus/Plus Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGT 221481 || || | |||||| |||||||||||| ||||||| | ||| |||||||| | | Sbjct 17055060 GCGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGAG-CAGTTGAGCCTCGGG-GCTTT 17055117 Query 221482 GAAGGGCATA-CGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGG 221540 || || ||| |||| | ||| | || |||| |||||| || ||||| || || | Sbjct 17055118 CAAAGGGATAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCG 17055177 Query 221541 GCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 ||||||| | | |||| || | || |||||| ||| || || |||||| |||||| Sbjct 17055178 GCCTGTGGCGCATGTTCGA--CCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGAT 17055235 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | ||||| | |||| || ||||| ||| | | ||| || || || Sbjct 17055236 AACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTATGCCAGTTT-------TTTAA 17055288 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || |||| || |||||| | | | | || || || | |||||| Sbjct 17055289 AGTCATAAGTCCGC--TC----AGGGGTGACGTACATG--TTGAGAGCGATAGAGGCCAG 17055340 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 || || || ||||||||||||||| | || |||| | ||| || || || |||||||| Sbjct 17055341 ATTGCAGACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCT 17055400 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 |||||||||||| ||||| | | || || ||| | ||| ||||| ||||||| Sbjct 17055401 GCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAC 17055460 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| | || ||||| || ||| | | | | || | ||| || | ||| | Sbjct 17055461 CATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG-CTGAG 17055519 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957 | ||||| | ||| || ||||| ||| |||| | ||| ||||| |||| Sbjct 17055520 CCTTCACCACACGCTTCACCCTCCCCTCCCTCT---CATATCTGGTGTAGAGTTCTTCAA 17055576 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || | ||| ||||| || || || ||| || |||||||| ||||| Sbjct 17055577 ACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGT 17055636 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | ||||| | |||| || |||||||||||| ||||||||||| || | || || | Sbjct 17055637 CTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGT 17055696 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | |||| |||||||||||| || |||| ||| |||| |||| || ||||| | | Sbjct 17055697 CCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACAT 17055756 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 || |||||| |||||||| || | ||| | |||||||||| |||||||| ||||||| Sbjct 17055757 CAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGAT 17055816 Query 222198 CCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA 222256 || ||| | | | | | |||| | | | | | || || || |||||||| | Sbjct 17055817 -CAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGGAACAG 17055875 Query 222257 CCGTTGGTGCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGAT 222315 ||||||||||| |||||| | | ||| || || | | ||| | | || ||| || Sbjct 17055876 CCGTTGGTGCCGGCAATGTAGCTCCCCG-TGGATCTGATGCAGCTGACTGCCACGCCAAT 17055934 Query 222316 ACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCAT 222375 || ||||| ||| ||||| | |||||| ||| || ||||| ||| ||||| || Sbjct 17055935 CCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAAT 17055994 Query 222376 AGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGC 222435 ||| ||||| | | ||||| || || |||| ||| | || ||| | || Sbjct 17055995 GCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGC 17056054 Query 222436 GTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 || || || || || |||||| || || | | |||| ||| | ||| ||||| Sbjct 17056055 ATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTC 17056114 Query 222496 TACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555 | | | |||| | |||||| || || || |||||| ||||| ||| Sbjct 17056115 GATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTG 17056174 Query 222556 GGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTT 222612 || | || | || || || || || |||||||| || ||||||||||| Sbjct 17056175 CGGACGCTCAGCTACTTTGCCATT-GATCT--TTAGCAGGTAGGAGCGCTCCAGAGTCTT 17056231 Query 222613 GAACCCAAAGTAGTT-GAGGTCAAAGTCTCTG 222643 ||| |||||| |||| ||| ||| |||||| Sbjct 17056232 GAAGCCAAAGAAGTTATAGGAGAAA-TCTCTG 17056262 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || |||||||| ||| | |||| || ||| ||| || | Sbjct 17054711 CATCTCCTCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGACGAT 17054770 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || || ||||||||||||| | ||| | ||| ||| | | |||||| Sbjct 17054771 CTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGA 17054830 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 17054831 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 17054890 Query 221245 GTT 221247 ||| Sbjct 17054891 GTT 17054893 >seq16 Length=36154882 Score = 123 bits (136), Expect = 5e-23 Identities = 111/137 (81%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| || |||||||| ||||| ||| || ||||| || Sbjct 10883071 GGAGAGCGCGTGGTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCC 10883130 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||||||||| ||| | ||| || | |||||||| ||| ||| ||||||||||| Sbjct 10883131 GCCATCTTCTGGCTGAAG-AAAAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCT 10883189 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 10883190 CATCAGCAGAGACGAGG 10883206 Score = 123 bits (136), Expect = 5e-23 Identities = 111/137 (81%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| || |||||||| ||||| ||| || ||||| || Sbjct 10897407 GGAGAGCGCGTGGTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCC 10897348 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||||||||| ||| | ||| || | |||||||| ||| ||| ||||||||||| Sbjct 10897347 GCCATCTTCTGGCTGAAGAA-AAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCT 10897289 Query 25992 CATCAGCAGGGACGAGG 26008 ||||||||| ||||||| Sbjct 10897288 CATCAGCAGAGACGAGG 10897272 >seq21 Length=37011614 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| | || || ||||| |||||||| |||||||| ||| ||||| ||||| Sbjct 18722717 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 18722776 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| ||| ||||| || || || |||||||||||| Sbjct 18722777 GCTATCTACTGGCTGAAGAAGAGGGGCCTAATGCCTGGCCTTACCTACTCCAACGAGCTC 18722836 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||||||||||| Sbjct 18722837 ATTAGCAGGGACGAGG 18722852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928814995692480