Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq20 199 3e-45 seq12 111 1e-18 seq15 100 2e-15 seq8 87.8 1e-11 seq4 87.8 1e-11 seq2040 86.0 4e-11 >seq20 Length=36767035 Score = 199 bits (220), Expect = 3e-45 Identities = 376/546 (69%), Gaps = 8/546 (1%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| |||||| | ||||| || || |||||| | |||| || |||| ||||| Sbjct 23816483 ATTGGCATTGATCTGGGAACCACCTATTCTTGTGTTGGGGTTTTCCAGCATGGCAAAGTT 23816542 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| || || || || ||||| || ||| ||||| |||||||||| Sbjct 23816543 GAGATCATTGCCAACGATCAGGGCAACAGAACCACTCCAAGCTATGTGGCTTTTACTGAC 23816602 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || ||| ||||||||||||||||| || | |||| |||| || || ||| || Sbjct 23816603 ACAGAAAGGCTTATTGGAGATGCTGCCAAGAACCAAGTTGCAATGAACCCCAATAACACA 23816662 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATCTGA 474570 || |||||||| ||| | ||||||| | || ||| |||| ||| | || || || || Sbjct 23816663 ATCTTTGATGCCAAACGGCTGATTGGAAGAAAGTTTAATGA-CCCAGTCGTACAGTCCGA 23816721 Query 474571 TATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCA 474628 ||| | |||||||| |||||||| | | | ||| || || | | || | | Sbjct 23816722 CATGAAGCTCTGGCCTTTCAAGGTGATTGACGATAATGGAAAGCCCAAAGTCCAGGTGGA 23816781 Query 474629 ATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 ||||| ||| || || || ||| | || || ||||||| || ||||| | | Sbjct 23816782 ATACA--AAGGGGAGACCAAGGCATTCTATCCTGAGGAAATTTCCTCCATGGTCCTGGTT 23816839 Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 |||||||| | | || ||| | || || |||||| || | ||||||| || || Sbjct 23816840 AAAATGAAGGAGATAGCTGAG-GCCTACCTGGGACAAAGGGTGTCAAATGCAGTCATCAC 23816898 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || ||||| ||||| || || || || | ||||| || || ||||| || || | Sbjct 23816899 AGTGCCAGCTTATTTCAACGACTCCCAGAGACAAGCTACCAAGGATGCTGGGGTGATCTC 23816958 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || || |||||| | | || |||||||| || |||||||| || |||| || || || Sbjct 23816959 TGGACTAAATGTTCTTAGGATCATTAATGAGCCCACAGCAGCAGCCATTGCATACGGCCT 23817018 Query 474868 TGATAA 474873 ||||| Sbjct 23817019 GGATAA 23817024 Score = 163 bits (180), Expect = 2e-34 Identities = 421/627 (67%), Gaps = 16/627 (3%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| ||||| ||||| |||||||||| | | || || |||||||| | Sbjct 23817309 TTGAGATTGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCCATCACAAGGGCACGTT 23817368 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT-C 475666 |||| || | || ||||| || || |||| |||| || ||||| ||| || | Sbjct 23817369 TTGAGGAGCTCAACTCAGATCTTTTCAGGGGAACAGTTGACCCAGTTGAGAAAGCCCTGC 23817428 Query 475667 AGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 || ||| | || || || ||||| || | | ||||||||||| || || || || || || Sbjct 23817429 AG-GATGCCAAGCTGGATAAATC-CAGGATTCATGAAATTGTCCTGGTCGGTGGCTCCAC 23817486 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATG 475784 ||||||||| ||||| |||| ||| || | | ||||| || ||| | | || Sbjct 23817487 AAGAATTCCCAAAAT-CCAGAAGCTCTTACAGGACTTCTTTAACGGCAAAGACCTGAACA 23817545 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTA 475843 | || | || || ||||||||||| || || || || || |||||||||||||| | | Sbjct 23817546 AGAGCATTAACCCAGATGAAGCTGTAGCCTACGGTGCAGCAGTCCAAGCAGCTATCCTCA 23817605 Query 475844 TCAG-GTCA-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 | | | || ||| ||||| | | || | | || | || || |||| || | Sbjct 23817606 TGGGCGACACCTCA---GAGAATGTCCAAGATCTGCTGCTGCTGGATGTGGCTCCCCTGT 23817662 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || | ||||| | || || ||||||| ||| || | |||| || | | Sbjct 23817663 CTCTGGGCATAGAAACCGCAGGCGGTGTTATGACACCTCTGATAAAGCGAAACACCACAA 23817722 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||| | | || ||||| || || ||||| || || |||| Sbjct 23817723 TCCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGTGTACT 23817780 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || | ||||||||||| ||| | || ||||| || ||| ||||| | || Sbjct 23817781 GATTCAGGTATTTGAAGGTGAGAGAGCCATGACCAAAGACAACAACCTTCTTGGCAAATT 23817840 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||| ||||| |||||| |||| ||||| || || || || || ||||| Sbjct 23817841 TGACCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTTCCACAGATAGAGGTAACATTTGA 23817900 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 | ||||| || || ||||| ||||| Sbjct 23817901 CGTAGATGCCAACGGCATTCTAAATGT 23817927 >seq12 Length=36466354 Score = 111 bits (122), Expect = 1e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| ||| | ||||| || ||||||| ||||| | ||| | || || Sbjct 26175059 TGAAGGTGAGAGAGCCATGACTAAGGACAATAACATCCTTGGGAAGTTTGAACTGACTGG 26175000 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| ||||||||||||||||| ||||| || || || || ||||| |||||||| || Sbjct 26174999 TATTCCACCTGCTCCCAGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATTGATGCCAA 26174940 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 26174939 TGGCATTCTCAATGTGTCTGC 26174919 >seq15 Length=39264731 Score = 100 bits (110), Expect = 2e-15 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||||||||| | || ||||| ||| ||||||| |||| || |||| ||| Sbjct 14803853 GCAGTTGGTATTGACCTGGGCACTACCTACTCCTGTGTAGGCGTTTTTCAGCATGGCAAA 14803794 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| || || ||||| ||||| |||||| | || ||| Sbjct 14803793 GTGGAAATCATTGCCAATGACCAGGGAAACAGAACCACACCCAGTTATGTTGCATTCACT 14803734 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 || || || || ||||| ||||| || || | |||| || | ||||| Sbjct 14803733 GACACGGAGAGGCTGATTGGTGATGCAGCCAAGAACCAAGTGGCCTTGAATCC 14803681 >seq8 Length=62059223 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || |||||||||||||| || ||| ||| || || || ||||| | || || Sbjct 20478937 GTGGAGATTATTGCCAATGACCAGGGAAATCGAATCACTCCCTCCTATGTGGCCTTCACC 20478878 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 |||| ||| | ||| ||||| |||||||| || ||| ||||| | ||||| || | Sbjct 20478877 AGTGAAGGTGAGCGTCTGATTGGTGATGCTGCCAAGAATC-AGCTGACCTCTAACCCCGA 20478819 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || || || |||||||| || || |||||||||| Sbjct 20478818 GAACACCATCTTTGATGCCAAGAGGCTGATTGGTCG 20478783 Score = 86.0 bits (94), Expect = 4e-11 Identities = 129/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || |||||||||||||| || || ||| || || || ||||| | || || Sbjct 20485865 GTGGAGATTATTGCCAATGACCAGGGAAACCGAATCACCCCCTCCTATGTGGCCTTCACC 20485806 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 |||| ||| | ||| ||||| |||||||| || ||| ||||| | ||||| |||| Sbjct 20485805 AGTGAAGGTGAGCGTCTGATTGGTGATGCTGCCAAGAATC-AGCTGACCTCTAACCCTGA 20485747 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || || || |||||||| || || | |||||||| | || | |||| | |||| || Sbjct 20485746 GAACACCATCTTTGATGCCAAGAGGCTCATTGGTCGCACTTGGGGTGATCCTTCTGTGCA 20485687 >seq4 Length=54508961 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 ||||| || ||| |||||||||| || | ||| || || || || || | || || Sbjct 45245820 GTAGAGATTATTCCCAATGACCAGGGAAGCCGAATCACCCCCTCCTACGTGGCCTTCACC 45245879 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 |||| ||| | ||| ||||| |||||||| || |||| |||| | ||||| |||| Sbjct 45245880 AGTGAAGGTGAGCGTCTGATTGGTGATGCTGCCAAGAATCA-GCTGACCTCTAACCCTGA 45245938 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || |||||||||||||| || || |||||||||| Sbjct 45245939 GAACACTATTTTTGATGCCAAGAGGCTGATTGGTCG 45245974 >seq2040 Length=528324 Score = 86.0 bits (94), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || ||||||||||| |||| |||||||| |||||||| || ||||| |||||||| Sbjct 458305 GGCATCCCTCCTGCTCCTCGAGGCGTTCCTCAGATTGAAGTGACATTTGACATTGATGCT 458364 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || | ||||| ||||| |||||| Sbjct 458365 AATGGCATCATGAATGTCTCTGCTGTTGATAA 458396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268069088914916