Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq8 149 7e-31 >seq8 Length=62059223 Score = 149 bits (164), Expect = 7e-31 Identities = 585/904 (65%), Gaps = 16/904 (2%) Strand=Plus/Plus Query 160062 TCCAGACATTGGACGGCGAACA-CGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATG 160120 |||||||| | ||| |||| | ||||| ||| || || |||||||| ||||| || Sbjct 44867682 TCCAGACACCTTATGGC-AACATCATCAACCTCTGGATCAAACTTATTTGCAAACAGGTG 44867740 Query 160121 GTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTAT 160180 ||| ||| |||| ||| | | ||| || || |||| || || ||| || | Sbjct 44867741 GTGTTGTTTC---AGGAGCCATGGGAGGTCACCAACTCCATACACACAAACAGAATGTCT 44867797 Query 160181 GTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTG 160240 || || || |||| || || | ||||| || || || ||| | | ||| Sbjct 44867798 GTAAACACCAGTGCATGGGTAATATGGGGCTCCCTTATTCATATCTCCTGCTGAATACGA 44867857 Query 160241 CCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGG 160300 ||||||||| | || | || ||||||| || |||| || || | |||| Sbjct 44867858 CCACTTCACTGCACGAGCCAAAGCTAGCATGTCTGACATGTCATACTTCCCATTTTGGGG 44867917 Query 160301 AACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCT 160360 || | |||||||| |||||| | ||||||||||||||||| ||| || || ||||| Sbjct 44867918 CACTGACCCGGGAACAGAGGGCATCCTCTGTAGGGTGGCCCACAAGTGCTCATCAGGGCT 44867977 Query 160361 GTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTGAG 160419 ||| |||||||| ||| |||| |||| || || | |||||| || || || Sbjct 44867978 GTATGTGTCCTTCTCCCACTCCAGAAACT-TCTGAACCTCACTGTCCTTCATCACATGTT 44868036 Query 160420 TAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAG 160479 || | | ||| || || |||||||| || | || ||||| || || ||| || | Sbjct 44868037 CCACAAAAGCTCTTGTGACCACAAAGTAGGCATTTCCTGAGAACATGGGGATGCTGATTG 44868096 Query 160480 GCGGCGTGTCTTTGTCCTGACCGGTGTTAGAC-ACCACTCCTTTCACCAGCGCGTGTCGC 160538 | || | |||| ||| ||| ||| | | | ||| || | ||| | Sbjct 44868097 GTGG-GGCACTTT-TCCAGACATATGT--GCCGATAACTTTGTTGGTGACTTTGTGATGA 44868152 Query 160539 TTCTTCCACCTGACC-ATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACC 160597 | || ||| | |||| ||||| | | || || ||| | ||| | ||||| || Sbjct 44868153 TACTGCCAAC-GACCTTTCTTGCGTGTAGGAGTGGCTTCAGACTCCATGCTGTTCCTCCC 44868211 Query 160598 GTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACC 160657 | ||| | ||||| | | || |||||| ||| || |||| || ||||| || || Sbjct 44868212 ATTGAGAAACTTCAGTGCCCTCACCATCTCTCTGTTTGTTTTGATGGGGAAGTCTGTCCC 44868271 Query 160658 GCACAAGTTTATCACGTACTTCCATTTCGCGCTCAG-GTCGTGCAGGTCCCTCATGCAAT 160716 || ||| | || |||| |||| || | | || | |||| || ||||||||| Sbjct 44868272 ACAGGTGTTAAGCAGGTACCTCCAGTT-GATGTGAGTATTTAGCAGATCTTTCATGCAAT 44868330 Query 160717 TAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCA 160776 | | ||||||||| || | | ||| || || || || || | |||| ||||||||| | Sbjct 44868331 TCAGATCTGCCTGTACTCTGAACCACGAGGCATATACCACTCTTTCTAATTTACTGGCTA 44868390 Query 160777 CAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCG 160836 |||| || || || || || | || | |||| ||| ||| | | | Sbjct 44868391 CAAACACATTGGGAAAGCATGAAGCAATCGCAGCCACAGCCTTCTTGAATGTTGCAGAGG 44868450 Query 160837 CCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACC 160896 || |||||||||| || || || | ||||||||| || || | || | || | || Sbjct 44868451 ATTTCTGGTCCACGTGTACACAGTAGATGTTCTGAGGAGCATAAACAGCTCGTAGAAGCC 44868510 Query 160897 TCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCT 160956 ||| |||||||| ||||| | ||||||||| || ||||| || || || || || ||| Sbjct 44868511 GCTCAAACATCTCAATCTTGTCATGGATCACCATGGAGTATGCAATGGGGAAATCTTTCT 44868570 Query 160957 CCTC 160960 | || Sbjct 44868571 CTTC 44868574 Score = 131 bits (144), Expect = 2e-25 Identities = 581/904 (64%), Gaps = 16/904 (2%) Strand=Plus/Plus Query 160062 TCCAGACATTGGACGGCGAACA-CGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATG 160120 |||||||| | ||| |||| ||||||| ||| || || |||||||| ||||| || Sbjct 44862956 TCCAGACACCTTATGGC-AACATCGTCAACCTCTGGATCAAACTTATTTGCAAACAGGTG 44863014 Query 160121 GTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTAT 160180 ||| ||| |||| ||| | | ||| || || |||| || || | | | | Sbjct 44863015 GTGTTGTTTC---AGGAGCCATGGGAGGTCACCAACTCCATACACACAAACAGCTCTTCT 44863071 Query 160181 GTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTG 160240 || || || |||| || || | ||||| || | || || ||| | | ||| Sbjct 44863072 GTAAACACCAGTGCATGGGTAATATGGGGCTCCCTTAGTCATATCTCCTGCTGAATACCA 44863131 Query 160241 CCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGG 160300 ||| ||||| | || | || ||| || || |||| || || | |||| Sbjct 44863132 CCAATTCACTGCACGAGCCAAAGCTACCATATCTGACATGTCATACTTCCCATTTTGGGG 44863191 Query 160301 AACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCT 160360 || | |||||||| |||||| | ||||||||||||||||| ||| || || ||||| Sbjct 44863192 CACTGACCCGGGAACAGAGGGCATCCTCTGTAGGGTGGCCCACAAGTGCTCATCAGGGCT 44863251 Query 160361 GTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTGAG 160419 ||| |||||||| ||| |||| |||| || || | |||||| || || || Sbjct 44863252 GTATGTGTCCTTCTCCCACTCCAGAAACT-TCTGAACCTCACTGTCCTTCATCACATGTT 44863310 Query 160420 TAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAG 160479 || | | ||| || || |||||||| || | || ||||| || || ||| || | Sbjct 44863311 CCACAAAAGCTCTTGTGACCACAAAGTAGGCATTTCCTGAGAACATGGGGATGCTGATTG 44863370 Query 160480 GCGGCGTGTCTTTGTCCTGACCGGTGT-TAGACACCACTCCTTTCACCAGCGCGTGTCGC 160538 | || || | || ||| ||| ||| | || | |||| || | ||| | Sbjct 44863371 GTGG-GTCACCTT-TCCAGACATTTGTGTTGATAACACT--GTTTGTGATATTGTGATGA 44863426 Query 160539 TTCTTCCACCTGAC-CATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACC 160597 | || ||| | ||| ||||||| || || ||| | ||| | ||||| || Sbjct 44863427 TACTGCCAAC-GACGTTTCTTGTGTCCAGGAGTGGCTTCAGACTCCATGCTGTTCCTCCC 44863485 Query 160598 GTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACC 160657 | ||| | ||||| | | || |||||| ||| || |||| || ||||| || || Sbjct 44863486 ATTGAGAAACTTCAGTGCCCTCACCATCTCTCTGTTTGTTTTGATGGGGAAGTCTGTCCC 44863545 Query 160658 GCACAAGTTTATCACGTACTTCCATTTCGCGCTCAG-GTCGTGCAGGTCCCTCATGCAAT 160716 || ||| | || |||| |||| || | | || | |||| || ||||||||| Sbjct 44863546 ACAGGTGTTAAGCAGGTACCTCCAGTT-GATGTGAGTATTTAGCAGATCTTTCATGCAAT 44863604 Query 160717 TAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCA 160776 | | ||||||||| || | | ||| || || || || || | |||| ||||||||| | Sbjct 44863605 TCAGATCTGCCTGTACTCTGAACCACGAGGCATATACCACTCTTTCTAATTTACTGGCTA 44863664 Query 160777 CAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCG 160836 |||| || || || || || | || | |||| || | ||| | | | Sbjct 44863665 CAAACACATTGGGAAAGCATGAAGCAATCGCAGCCACAGCGTGCCTGAATGTTGCAGAGG 44863724 Query 160837 CCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACC 160896 || ||||||||| || || || | ||||||||| || || | || | || | || Sbjct 44863725 ATTTCTTGTCCACGTGTACACAGTAGATGTTCTGAGGAGCATAAACAGCTCGTAGAAGCC 44863784 Query 160897 TCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCT 160956 ||| |||||||| || || | ||||||||| || ||||| || || || || || ||| Sbjct 44863785 GCTCAAACATCTCAATTTTCTCATGGATCACCATGGAGTATGCAATGGGGAAATCTTTCT 44863844 Query 160957 CCTC 160960 | || Sbjct 44863845 CTTC 44863848 Score = 120 bits (132), Expect = 4e-22 Identities = 581/905 (64%), Gaps = 18/905 (2%) Strand=Plus/Plus Query 160062 TCCAGACATTGGACGGCGAACA-CGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATG 160120 |||||||| | ||| |||| | ||||| ||| || || |||||||| ||||| || Sbjct 44860677 TCCAGACACCTTATGGC-AACATCATCAACCTCTGAATCAAACTTATTTGCAAACAGGTG 44860735 Query 160121 GTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTAT 160180 ||| ||| |||| ||| | | ||| || || |||| || || | | | | Sbjct 44860736 GTGTTGTTTC---AGGAGCCATGGGAGGTCACCAACTCCATACACACAAACAGCTCTTTT 44860792 Query 160181 GTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTG 160240 || || || |||| || || | ||||| || || || ||| | | || Sbjct 44860793 GTTAACACCAGTGCATGGGTAATATGGGGCTCCCTTATTCATATCTCCTGCTAAATATGA 44860852 Query 160241 CCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGG 160300 ||||||||| | || | || ||||||| || |||| || || | |||| Sbjct 44860853 CCACTTCACTGTACGAGCCAAAGCTAGCATGTCTGACATGTCATACTTCCCATTTTGGGG 44860912 Query 160301 AACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCT 160360 || | |||||||| |||||| | ||||||||||||||||| ||| || || ||||| Sbjct 44860913 CACTGACCCGGGAACAGAGGGCATCCTCTGTAGGGTGGCCCACAAGTGCTCATCAGGGCT 44860972 Query 160361 GTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTGAG 160419 ||| |||||||| ||| |||| |||| || || | |||||| || || || Sbjct 44860973 GTATGTGTCCTTCTCCCACTCCAGAAACT-TCTGAACCTCACTGTCCTTCATCACATGTT 44861031 Query 160420 TAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAG 160479 || | | ||| || || |||||||| || | || ||||| || || ||| || | Sbjct 44861032 CCACAAAAGCTCTTGTGACCACAAAGTAGGCATTTCCTGAGAACATGGGGATGCTGATTG 44861091 Query 160480 GCGGCGTGTCTTTGTCCTGACCGGTGT-TAGACACCACTCCTTTCACCAGCGCGTGTCGC 160538 | || || | || |||| || ||| | || | |||| || | ||| | Sbjct 44861092 GTGG-GTCACCTT-TCCTCACATTTGTGTTGATAACACT--GTTTGTGATATTGTGGTGA 44861147 Query 160539 TTCTTCCACCTGAC-CATCTTGTGCGGTGGCATGCG-TTCCGTCTCTAGACTGTTGGCAC 160596 | || ||| | ||| ||||| | | | | || ||| | ||| | ||||| | Sbjct 44861148 TACTGCCAAC-GACGTTTCTTG-GAGCCAGAAGTCGCTTCAGACTCCATGCTGTTCCTCC 44861205 Query 160597 CGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTAC 160656 | | ||| | ||||| | | || |||||| ||| || |||| || ||||| || | Sbjct 44861206 CATTGAGAAACTTCAGTGCCCTCACCATCTCTCTGTTTGTTTTGATGGGGAAGTCTGTCC 44861265 Query 160657 CGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAG-GTCGTGCAGGTCCCTCATGCAA 160715 | || ||| | || |||| |||| || | | || | |||| || ||||||| Sbjct 44861266 CACAGGTGTTAAGCAGGTACCTCCAGTT-GATGTGAGTATTTAGCAGATCTTCCATGCAA 44861324 Query 160716 TTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCC 160775 || | ||||||||| || | | ||| || || || || || | ||| ||||||||| Sbjct 44861325 TTCAGATCTGCCTGTACTCTGAACCACGAGGCATATACCACTCTTACTAATTTACTGGCT 44861384 Query 160776 ACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCC 160835 ||||| || || || || || | || | |||| ||| ||| | | Sbjct 44861385 ACAAACACATTGGGAAAGCATGAAGCAATCGCACCCACAGCCTTCTTGAATGTTGCAGAG 44861444 Query 160836 GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAAC 160895 | || |||||||||| || || || | ||||||||| || || | || | || | | Sbjct 44861445 GATTTCTGGTCCACGTGTACACAGTAGATGTTCTGAGGAGCATAAACAGCTCGTAGAAGC 44861504 Query 160896 CTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTC 160955 | ||| |||||||| ||||| | ||||||||| || ||||| || || || || || || Sbjct 44861505 CGCTCAAACATCTCAATCTTGTCATGGATCACCATGGAGTATGCAATGGGGAAATCTTTC 44861564 Query 160956 TCCTC 160960 || || Sbjct 44861565 TCTTC 44861569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577200678478920