Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15 214 2e-50 seq11 109 7e-19 seq21 82.4 9e-11 >seq15 Length=39264731 Score = 214 bits (236), Expect = 2e-50 Identities = 960/1494 (64%), Gaps = 48/1494 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| || | || ||||||||| || || || | | | Sbjct 17056177 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATATCGAAGCGGCC 17056118 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | | || ||||| ||||| | || |||||||| Sbjct 17056117 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 17056059 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||||||| || || |||||| ||||||| |||||||| |||||| ||||| || Sbjct 17056058 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 17055999 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | || ||||| | || || | | | || || | ||||| || | || || Sbjct 17055998 CAGCATTGAGGGGATCTACGACACACTGAAGCATTGCGCCCTCATCTCCAAATCAGCCGG 17055939 Query 75451 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 75507 || ||||| || || || | || | ||| ||| | || ||| || || Sbjct 17055938 AGGGATTGGCGTGG-CAGTCA-GCTGCATCAGATCCACGGGGAGCTAC-ATTGCCGGCAC 17055882 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || || | || || | |||||| | | || | ||| |||||| || || Sbjct 17055881 CAACGGCTGTTCCAACGGGCTTGTCCCAATGTTGAGGGTGTACAACAACACAGCACGGTA 17055822 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 ||| |||| | ||||| | ||| || || |||| | ||| |||| || |||| Sbjct 17055821 TGTTGATCAGG-GGGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGC 17055763 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 | ||| | | || ||||| ||| | | || ||| || | || ||| || Sbjct 17055762 ACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAG-AACACGGGAAAGGAGGAGCAGCGA 17055704 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 || || || || | |||||||||| || ||||| |||||||||||||| ||| | Sbjct 17055703 GCCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAAC 17055644 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGG 75801 | | ||||| || | || |||| | | || || || || || | ||| Sbjct 17055643 AACGAAGACTGGTCCCTGATGTGCCCAGCCGACTGCCCCGGACTGGATGAGTGCTG-GGG 17055585 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 ||||||||||||| |||||||| | ||||| |||||| || | || ||| || Sbjct 17055584 GGAGGAGTTTGAAGAACTCTACACCAGATATGAGAGGGAGGGGAGGGTGAA-GCGTGTGG 17055526 Query 75862 ACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 || | | | | | ||| | || || || | || ||||| || ||||| || || | Sbjct 17055525 TGAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACTGGGACGCCGT 17055466 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 | ||| | ||||| || || || |||| |||||| ||||| ||||| |||| || |||| Sbjct 17055465 ACATGGTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA 17055406 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 || || || |||||||||||||| | |||||||| ||||| ||| ||| || | Sbjct 17055405 AGTGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTCT 17055346 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 ||||| |||| || ||||| || | ||| |||| ||| || |||| ||| | Sbjct 17055345 GCAATCTGGCCTCTATCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACT 17055289 Query 76101 ATGAAAAACT-TCATGAAATCA-CAAAG--ATTGTTACCAAAAATCTAAACCGAGTCATT 76156 | ||||||| ||| | | | ||||| ||||| || || | ||| || || Sbjct 17055288 TTAAAAAACTGGCAT-ACGTGACCAAAGTAATTGT---CAGGAACTTGAACAAGGTTATC 17055233 Query 76157 GACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATT 76216 |||| || | || || || || || | | ||| || ||||| ||||| || || Sbjct 17055232 GACATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATA 17055173 Query 76217 GGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCA 76276 || | || || || || | || |||| || || | || || | ||||| Sbjct 17055172 GGAATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTCATGCGTTATCCCTTTGA---- 17055117 Query 76277 GATGAAGCCAAGGAGATGAA-TGCT-------CGTATCTTTGAAACCATGTATCACGCAT 76328 ||||| | | | || |||| | |||||||| || || || | || Sbjct 17055116 ----AAGCCCCGAGGCTCAACTGCTCAACATCCAGATCTTTGAGACAATCTACTATGCCG 17055061 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | |||| ||||| || || |||||| | | ||| |||||||||| | ||| || | Sbjct 17055060 CTTTGGAAGCGAGCTGCGAGCTGGCTGCCGAGCTAGGCACCTATGAGACGTATGAAGGCT 17055001 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA-GCTCAAC 76447 | || | | | || | ||||||| || ||||||| || || |||| | | Sbjct 17055000 CGCCGGTGAGTAAGGGCATTCTTCAGTACGACATGTGGG-AGAAGACTCCAACGGACCTG 17054942 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | |||||| | | || ||||| ||| | | || | | ||||| || || Sbjct 17054941 TGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTG 17054882 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 |||| || ||||| || ||||||||||| || ||| |||| || || || | | | || Sbjct 17054881 CTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAG 17054822 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 | ||||||| ||||||||| | | ||| | || |||||| || |||||| Sbjct 17054821 GCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAAC 17054762 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||||| |||| ||||| | | ||| || || ||| |||| |||||| Sbjct 17054761 CCCCACCTGCTCAAAGACCTGACGGAGAGGGGCCTGTGGAATGAGGAGATGAAG 17054708 >seq11 Length=32426571 Score = 109 bits (120), Expect = 7e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| || ||||| ||||||||||||||||||||||| || || |||| ||||||| Sbjct 23758138 TCGCAGACAGAAACTGGTACACCATATATGCTTTACAAGGACGCCTGCAACAGGAAGAGT 23758197 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 || || | ||| |||| || ||||| | ||||| ||||| || || |||||||| Sbjct 23758198 AATCAGCAAAATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAGATCGTAGAGTAC 23758257 Query 76016 ACAGATAAGGATGAG 76030 ||| || |||||| Sbjct 23758258 ACAAGCAAAGATGAG 23758272 >seq21 Length=37011614 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 ||||| || | || ||||| |||||| || ||||||||||| || ||||| ||| || Sbjct 18722720 GAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATT-TGCTGC 18722778 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 ||| || ||| |||||||| |||| || ||||| ||||| || ||| || || || || Sbjct 18722779 TATCTACTGGCTGAAGAAGAGGGGCCTAATGCCTGGCCTTACCTACTCCAACGAGCTCAT 18722838 Query 65196 TTCCCGAGATGAGG 65209 | | | || |||| Sbjct 18722839 TAGCAGGGACGAGG 18722852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550457572960