Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq20 324 1e-82 seq15 98.7 7e-15 seq8 87.8 1e-11 >seq20 Length=36767035 Score = 324 bits (358), Expect = 1e-82 Identities = 952/1452 (66%), Gaps = 14/1452 (1%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| ||||| || |||||||| | |||||||| || || || || || || |||| Sbjct 23817927 ACATTTAGAATGCCGTTGGCATCTACGTCAAATGTTACCTCTATCTGTGGAACACCTCGG 23817868 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 |||| || ||||| ||| | | |||| | || ||| || || ||||| || | Sbjct 23817867 GGAGCTGGAGGGATACCTGTGAGGTCAAATTTGCCAAGAAGGTTGTTGTCTTTGGTCATG 23817808 Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || ||||| || || | || || |||| | | | || |||||||| || || | Sbjct 23817807 GCTCTCTCACCTTCAAATACCTGAATCAGTA-CACCTGGCTGGTTATCTGAGTATGTGGA 23817749 Query 281611 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || | |||| | | || || ||||| ||||||| | || | | ||||||| Sbjct 23817748 GAAGA-TCTGAGTCTGCTTTGTGGGGATTGTGGTGTTTCGCTTTATCAGAGGTGTCATAA 23817690 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 ||| || || ||||||| || ||||| || |||| ||||| | || | | || || Sbjct 23817689 CACCGCCTGCGGTTTCTATGCCCAGAGACAGGGGAGCCACATCCAGCAGCAGCAGATCTT 23817630 Query 281730 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | | || || || | || | || ||||||||||| | || ||||| || || | Sbjct 23817629 GGACATTCTCTGAGGTGTCGCCCATGAGGATAGCTGCTTGGACTGCTGCACCGTAGGCTA 23817570 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 281848 |||||||||| || |||| | | || || | ||| || || || || | || |||| Sbjct 23817569 CAGCTTCATCTGGGTTAATGCTCTTGTTCAGGTCTTTGCCGTTAAAGAAGTCCTGTAAGA 23817510 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA-CCTG 281907 || | | || ||||| | | || || || || | ||||||||||| | |||| Sbjct 23817509 GCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCGACCAGGACAATTTCATGAATCCTG 23817451 Query 281908 TGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAA 281967 ||||||||||| || | |||| | |||| ||||| || |||| | || || Sbjct 23817450 -GATTTATCCAGCTTGGCATCCTGCAGGGCTTTCTCAACTGGGTCAACTGTTCCCCTGAA 23817392 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCC 282027 | ||||| || || || || || || || | | | | | |||||||||| Sbjct 23817391 AAGATCTGAGTTGAGCTCCTCAAAACGTGCCCTTGTGATGGAGGTGTAAAAATCAATTCC 23817332 Query 282028 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 282087 || || | ||| |||| ||||| | | ||||| || |||| | | || || Sbjct 23817331 CTCAAAGAGAGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGATAAGGTCCTCTTTGC 23817272 Query 282088 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTT- 282146 | ||||| ||||| | ||||| | | ||| | || ||| | ||| | || Sbjct 23817271 CCTCTCACAAGCTGTACGCAGTCTCCTCACTGCTCT--CTTATTCTGGCTAATGTCCTTC 23817214 Query 282147 -TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 282205 ||| |||||| || || || || ||| | | || | | || ||||| || || Sbjct 23817213 TTATGTTTTCTTTTAAATTCCTCTACAAAGTGCTTGACCATTTGGTTGTCAAAGTCCTCC 23817154 Query 282206 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 282265 || || | | || | |||||| || ||| | || | || | |||||||||| | | Sbjct 23817153 CCACCAAGGTGTGTGTCTCCTGAAGTGGCTTTGACCTCAAAGATGCCATCTTCAATGGTC 23817094 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT-T 282324 | || || |||||| ||| || || || | |||||| || || ||||| |||| | Sbjct 23817093 AGAATAGACACATCAAAGGTGCCTCCGCCAAGATCAAAGATCAGCACATTGCGTTCTCCT 23817034 Query 282325 GTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 282384 || ||| ||| ||| || || || |||| || || || || || |||||||| || || Sbjct 23817033 GTTTTGCCTTT-ATCCAGGCCGTATGCAATGGCTGCTGCTGTGGGCTCATTAATGATCCT 23816975 Query 282385 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 | |||||| || |||| || || ||||| || || |||||||| || || ||||| Sbjct 23816974 AAGAACATTTAGTCCAGAGATCACCCCAGCATCCTTGGTAGCTTGTCTCTGGGAGTCGTT 23816915 Query 282445 AAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGC 282504 ||||| || || || || || || |||| || || || ||| | || || || Sbjct 23816914 GAAATAAGCTGGCACTGTGATGACTGCATTTGACACCCTTTGTCCCAGGTAGGCCTCAGC 23816855 Query 282505 TGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGA 282564 | | | ||||||||| | | ||| || ||||||| || ||| | || ||||| Sbjct 23816854 TATCTCCTTCATTTTAACCAGGACCATGGAGGAAATTTCCTCAGGATAGAATGCCTTGGT 23816795 Query 282565 TTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 282624 || || ||| || | | | || || | | | | ||| || || || || Sbjct 23816794 CTCCCCTTTGTATTCCACCTGGACTTTGGGCTTTCCATTATCGTCAATCACCTTGAAAGG 23816735 Query 282625 CCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 282684 ||| ||||| || || || || | |||||||||| | ||| ||||| | ||||| Sbjct 23816734 CCAGAGCTTCATGTCGGACTGTACGACTGGGTCATTAAACTTTCTTCCAATCAGCCGTTT 23816675 Query 282685 TGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAAT 282744 |||||||| || || || | || || | |||| |||| | ||||| ||||||||||| Sbjct 23816674 GGCATCAAAGATTGTGTTATTGGGGTTCATTGCAACTTGGTTCTTGGCAGCATCTCCAAT 23816615 Query 282745 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 282804 || |||||| || ||||| | ||||| |||||| || | || || ||||| || Sbjct 23816614 AAGCCTTTCTGTGTCAGTAAAAGCCACATAGCTTGGAGTGGTTCTGTTGCCCTGATCGTT 23816555 Query 282805 CGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAA 282864 ||||| || |||||||| |||| || | || || |||||| | | || ||||| | Sbjct 23816554 GGCAATGATCTCAACTTTGCCATGCTGGAAAACCCCAACACAAGAATAGGTGGTTCCCAG 23816495 Query 282865 ATCAATACCAAT 282876 |||||| ||||| Sbjct 23816494 ATCAATGCCAAT 23816483 >seq15 Length=39264731 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| |||||||| || || || || || || | | ||| Sbjct 14803007 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCGGTGGGCTCGTTGATGATACGAAGGACA 14803066 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | ||||||||||| ||||| || | || || ||||| || || Sbjct 14803067 TTAAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCGTTGAAGTAG 14803126 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| ||||| | |||||| |||||| Sbjct 14803127 GCAGGCACAGTCACTACGGCACTTGTTAC 14803155 >seq8 Length=62059223 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || ||||| || |||| || |||||| ||||||||||| | || ||||| |||||||| Sbjct 20478288 GGCTCATTGATGATTCGCATAACATTCAGACCAGCAATGGTACCAGCATCCTTAGTGGCC 20478347 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || | || | ||||||||| || ||||| ||||| | || |||| ||| || Sbjct 20478348 TGGCGCTGGGCATCGTTAAAGTAGGCAGGGACAGTGACCACAGCATGTGTGAC 20478400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740504371148142