Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq16 93.3 8e-14 seq12 84.2 4e-11 >seq16 Length=36154882 Score = 93.3 bits (102), Expect = 8e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 ||||||| ||| | ||||||||||| || || ||||| | || | | | || || || Sbjct 32713287 GATAGCCTCAGCTCTTTGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGACACTGT 32713346 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 ||||||||||| ||||| ||||| || || || ||||| || ||||| || ||||| | Sbjct 32713347 CTTTTTCATACTGAGGAAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTG 32713406 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || ||||| | | | ||| | || || |||||| || | || || || Sbjct 32713407 CACCATGTTCATCCTCTGGTGGATTGGAATCAAATGGGTTCCCGGTGGGCA 32713457 >seq12 Length=36466354 Score = 84.2 bits (92), Expect = 4e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 58377 GAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCA 58436 |||| | |||||||| | || || || || || || || | || || |||||||||| Sbjct 16128610 GAGCTCTGTGGTGGTATTTCATCTCCAAGGGCATTGAGTATCTGGACACTGTGTTTTTCA 16128551 Query 58437 TACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGT 58496 | || |||||||| || || || || | ||| || ||||| || ||||||| | |||| Sbjct 16128550 TCCTGAGGAAAAAATTCAACCAGGTCACCTTCCTGCACGTCTACCATCATTGCTCCATGT 16128491 Query 58497 TTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | || | | ||| | || || || ||| | |||||||| ||| Sbjct 16128490 TCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 16128447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903382211793120