Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq19 123 3e-23 seq12 102 9e-17 seq2456 87.8 2e-12 >seq19 Length=31245232 Score = 123 bits (136), Expect = 3e-23 Identities = 357/535 (67%), Gaps = 21/535 (4%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 |||| ||| | || || || |||||| || |||||||| ||||||||| ||| | Sbjct 13864787 GCCAATTCCTTGGGCGAGCTGAAGTCGTCAACATGAATGAAGGCGTCTCCCTGGATAAAG 13864846 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || |||||||||| || | || ||||| || | || || | || | | |||| Sbjct 13864847 TTCTCGTAATTCTGCCTGGGTGGGCCGAGAACCACTGGCACTGTCCCCAC--TGAGAGCG 13864904 Query 177066 CG--GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGA 177123 | ||| ||||| || ||||| || || |||| | ||||||||||||||| ||||||| Sbjct 13864905 GGTTGTACAGTTTCTCAGTAATGTAATCTTTGTGGATGGAGTTCTCAAACGCCAGATAGA 13864964 Query 177124 ATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTAC 177181 | || ||| | ||| || |||| | |||| | || | || || || || | | Sbjct 13864965 ACTTGCAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCAGAGATGTACTCCCCAAAGGC 13865022 Query 177182 GTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCAC 177241 | || ||| |||| | || |||||||| ||| || ||| ||| || | ||| Sbjct 13865023 CTGTCCATATGCATGAACCTCAATGTGTTTGTAGAGTTCATTGTAATATTTCACCCGCAC 13865082 Query 177242 GTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGG 177301 ||| || | |||||| ||||| || | |||||| | | |||| | ||||| || || Sbjct 13865083 GTGATCCTGGTTCCAGTTGCTTACAATCCAGCAGATCAGCTTG-TTTTTGCTGG-GTGGT 13865140 Query 177302 ATTCGATACTAATGCAGTGTCT-CTG-AGCGTTAGTGATCCATAGGGCACGTGAATATCC 177359 | || || | | | ||| ||| || | || ||||| ||||| | ||| || Sbjct 13865141 ACAAAATCCTCTTCCCCT-TCTGCTGCTACG--ATGGACCCATAAGGCACTTCAATGTCA 13865197 Query 177360 GAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGG 177419 | || | | ||| | | || |||||||| ||||| ||||| || | | ||| Sbjct 13865198 GCATCCTGACGGTAATTGAGAGTCAGATTGAACAGGTTCTCTAT-CCCAGGCAGCTGGGA 13865256 Query 177420 C---TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTC 177471 | ||| || ||||| || |||||||||||||||||||| || || | |||| Sbjct 13865257 CGAATGTGAC--GGCGACTCAAAGTTCATCCATATCCACTTCTGGAACGACGGTC 13865309 Score = 107 bits (118), Expect = 2e-18 Identities = 351/533 (66%), Gaps = 17/533 (3%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 |||| ||| | || || || |||||| || |||||||| | ||||| |||| | Sbjct 13857570 GCCAATTCCTTGGGCGAGCTGAAGTCGTCAACATGAATGAAGGAGTCTCGTGGGATAAAG 13857629 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || |||||||||| || | || ||||| || | || || | | | | || | Sbjct 13857630 TTCTCGTAATTCTGCCTGGGTGGGCCGAGAACCACTGGCACTGTCCACACATTGAGCGGG 13857689 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | ||||||||||||||| |||||||| Sbjct 13857690 TTGTACAGTTTCTCAGTAATGTAATCTTTGTGGATGGAGTTCTCAAACGCCAGATAGAAC 13857749 Query 177126 TTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || ||| | ||| || |||| | |||| | || | || || | || | | | Sbjct 13857750 TTGCAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCAGAGATGTATTTCCCGAAGGCCT 13857807 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGT 177243 || ||| |||| | || |||||||| ||| || ||| ||| || | || || Sbjct 13857808 GTCCATATGCATGAACCTCAATGTGTTTGTAGAGTTCATTGTAATATTTCACGCGCATGT 13857867 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGAT 177303 | || | |||||| ||||| || | |||||| | | |||| | ||||| || || | Sbjct 13857868 GATCCTGGTTCCAGTTGCTCACCATCCAGCAGAGCAGCTTG-TTTTTGCTGG-GTGGTAC 13857925 Query 177304 TCGATACTAATGCAGTGTCT-CTG-AGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 || || | | | ||| ||| || | || ||||| ||||| | ||| || | Sbjct 13857926 AAAATCCTCTTCCCCT-TCTGCTGCTACG--ATGGACCCATAAGGCACTTCAATGTCAGC 13857982 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC- 177420 || | | ||| | | || |||||||| ||||| ||||| || | | ||| | Sbjct 13857983 ATCCTGACGGTAATTGAGAGTCAGATTGAACAGGTTCTCTAT-CCCAGGCAGCTGGGACG 13858041 Query 177421 --TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTC 177471 ||| || ||||| ||||||||||||||||||||||| || || | |||| Sbjct 13858042 AATGTGAC--GGCGACTCTAAGTTCATCCATATCCACTTCTGGAACGACGGTC 13858092 >seq12 Length=36466354 Score = 102 bits (112), Expect = 9e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 176958 GGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTC 177017 || || ||| |||| | ||| ||||||||||| |||||| ||| | |||| ||||||||| Sbjct 18882771 GGCGAGGTGAAGTCTTCCACATGAATGAAAGCATCTCCCTGGATGAAATTCTCGTAATTC 18882830 Query 177018 TCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTT 177077 | || | || || || || | || || | || | | || | ||| ||||| Sbjct 18882831 TGCCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCACTAACAGTGGGTTGTACAGTTTC 18882890 Query 177078 TCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG 177131 || ||||| |||||| |||| | ||||||||||||||| | |||||| || ||| Sbjct 18882891 TCAGTAATGTAGTCCTTGTGAATGGAGTTCTCAAACGCCAAATAGAACTTGCAG 18882944 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGG-GACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 ||||||| | | ||| || ||| |||| | ||| ||||||||||| |||||| ||| | | Sbjct 18757863 GCCAGTT-TCTGGGGCGAGGTGAAGTCTTCCACATGAATGAAAGCATCTCCCTGGAGGAA 18757921 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGA 177064 ||| |||||||||| || | || || || || | || || | || | | || | Sbjct 18757922 ATTCTCGTAATTCTGCCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCACTAACAGTGG 18757981 Query 177065 TCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAA 177124 ||| ||||| || ||||| |||||| | || | ||||||||||||||| | |||||| Sbjct 18757982 GTTGTACAGTTTCTCAGTAATGTAGTCCTTATGAATGGAGTTCTCAAACGCCAAATAGAA 18758041 Query 177125 TTTACAG 177131 || ||| Sbjct 18758042 CTTGCAG 18758048 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 176958 GGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTC 177017 || || ||| |||| | ||| |||||||| || |||||| ||| | |||| ||||||||| Sbjct 18820562 GGCGAGGTGAAGTCTTCCACATGAATGAAGGCATCTCCCTGGATGAAATTCTCGTAATTC 18820621 Query 177018 TCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTT 177077 | || | || || || || | || || | || | | || | ||| ||||| Sbjct 18820622 TGCCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCACTAACAGTGGGTTGTACAGTTTC 18820681 Query 177078 TCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG 177131 || ||||| |||||| |||| | ||||||||||||||| | |||||| || ||| Sbjct 18820682 TCAGTAATGTAGTCCTTGTGAATGGAGTTCTCAAACGCCAAATAGAACTTGCAG 18820735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 176958 GGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTC 177017 || || ||| |||| | ||| |||||||| || |||||| ||| | | || || |||||| Sbjct 18837217 GGCGAGGTGAAGTCTTCCACATGAATGAAGGCATCTCCCTGGATGAAGTTCTCATAATTC 18837276 Query 177018 TCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCG--GTAGAGTT 177075 | || | || || || || | || || | || | |||||| | ||| | || Sbjct 18837277 TGCCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCAC--TAAGAGTGGGTTGTACAATT 18837334 Query 177076 TTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG 177131 | || ||||| |||||| |||| | ||||||||||||||| | |||||| || ||| Sbjct 18837335 TCTCAGTAATGTAGTCCTTGTGAATGGAGTTCTCAAACGCCAAATAGAACTTGCAG 18837390 >seq2456 Length=45617 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 176958 GGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTC 177017 || || ||| |||| | ||| |||||||| || |||||| ||| | | || || |||||| Sbjct 15159 GGCGAGGTGAAGTCTTCCACATGAATGAAGGCATCTCCCTGGATGAAGTTCTCATAATTC 15218 Query 177018 TCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCG--GTAGAGTT 177075 | || | || || || || | || || | || | |||||| | ||| | || Sbjct 15219 TGCCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCAC--TAAGAGTGGGTTGTACAATT 15276 Query 177076 TTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG 177131 | || ||||| |||||| |||| | ||||||||||||||| | |||||| || ||| Sbjct 15277 TCTCAGTAATGTAGTCCTTGTGAATGGAGTTCTCAAACGCCAAATAGAACTTGCAG 15332 Score = 82.4 bits (90), Expect = 9e-11 Identities = 125/176 (71%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 176958 GGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTC 177017 || || ||| |||| | ||| |||||||| || |||||| ||| | | || || |||||| Sbjct 39697 GGCGAGGTGAAGTCTTCCACATGAATGAAGGCATCTCCCTGGATGAAGTTCTCATAATTC 39756 Query 177018 TCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCG--GTAGAGTT 177075 | || | || || || || | || || | || | |||||| | ||| | || Sbjct 39757 TGCCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCAC--TAAGAGTGGGTTGTACAATT 39814 Query 177076 TTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAG 177131 | || ||||| |||||| | || | ||||||||||||||| | |||||| || ||| Sbjct 39815 TCTCAGTAATGTAGTCCTTATGAATGGAGTTCTCAAACGCCAAATAGAACTTGCAG 39870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578413439563200