Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1437 89.7 3e-13 >seq1437 Length=1065406 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | || | || || ||| ||| || || |||||||| |||||| Sbjct 749790 CCACCCCTGAGACGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 749849 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| || | || Sbjct 749850 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGA 749909 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || ||||| || | ||| || | |||||| |||| || || Sbjct 749910 ATGCCTTCCTTATCCTGGATTTTGGCCTTGA-CATTCTCGATGGTGTCACTTGGCTCAAC 749968 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| |||||||||||||| Sbjct 749969 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 750016 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | || | || || ||| ||| || || |||||||| || ||| Sbjct 779099 CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 779158 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | ||| || || | || Sbjct 779159 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGA 779218 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| || | ||| ||| ||||||||||| || || Sbjct 779219 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGA-CATTCTCAATGGTGTCGCTTGGCTCAAC 779277 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| |||||||||||||| Sbjct 779278 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 779325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693716392640