Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15 150 2e-31 seq11 84.2 2e-11 >seq15 Length=39264731 Score = 150 bits (166), Expect = 2e-31 Identities = 935/1476 (63%), Gaps = 50/1476 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | |||||||| |||| ||||| || | | || | ||||| ||| | | | Sbjct 17054763 TTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCC 17054822 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || ||||| |||| | Sbjct 17054823 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 17054882 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || || | ||| || ||||||| || || ||||||||| Sbjct 17054883 AGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTT-CCAGTCCCA 17054941 Query 147072 CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACT 147131 || || || ||| | ||||||||||||||| || | || ||| | || Sbjct 17054942 CAGGTCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGAATGCCCTTACTCACCGGCGA 17055001 Query 147132 GCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCACAGCTTGCCTCGAGCG 147190 ||| | |||| ||| | || | || | || |||| || ||||| || || | | Sbjct 17055002 GCCTTCATACGTCTCATAGGTGCC-TAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAAAG 17055060 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | ||||||| || || || ||| || |||| || | || || ||| || Sbjct 17055061 CGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCA- 17055119 Query 147251 AAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 |||| ||| |||| || | |||||||| ||||| ||||||| |||| || || || Sbjct 17055120 AAGGGATAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGC 17055179 Query 147310 CGATGC----TTTTCGT--TGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCA 147363 | || | |||| | ||| ||||| | | || |||| |||| || Sbjct 17055180 CTGTGGCGCATGTTCGACCTCCTG-GCTTCTTCCACC-----GGGTAGTAGTTGATGTCG 17055233 Query 147364 ATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCA 147423 |||| |||||| | ||| | || | ||||| || | | ||||| | || ||| Sbjct 17055234 ATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTATGCCAGTTTTTTAAAGTCA 17055293 Query 147424 TAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGAC 147482 ||||||| || | |||||| || ||| | |||||||| |||||||||||||| Sbjct 17055294 TAAGTCCGCTCAGGGGTGACGTAC--AT--GTTGAGAGCGATAGAGGCCAGATTGCAGAC 17055349 Query 147483 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTAT 147542 ||| ||| || | |||||| |||||||| | ||| ||||||||||| || || Sbjct 17055350 CGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGAT 17055409 Query 147543 GACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 | |||| ||| ||||| ||||| |||| ||||| ||||||||| ||| ||||||||| Sbjct 17055410 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGG 17055469 Query 147603 TCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGC--TC-G 147656 || || || |||| || | ||| | ||| || || | ||| || || Sbjct 17055470 CGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACC-AT--AGCTGCTGAGCCTTCAC 17055526 Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716 ||| |||| | | ||||| | || || | ||| | |||||||| || Sbjct 17055527 CACACGCTTC---ACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTC 17055583 Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTC 147776 || |||| || | || ||||| || | || |||||||| ||||| ||| || Sbjct 17055584 CCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGACCA---GTCTTC 17055640 Query 147777 CGCGTT---AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC- 147832 ||| || || ||| || || || || | |||||| ||||| | || || | Sbjct 17055641 GTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCT 17055700 Query 147833 -GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCG 147891 || | ||| ||||| ||| |||| |||| | || | | | | | || Sbjct 17055701 GGCTCGCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCA 17055758 Query 147892 GCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCG 147948 ||||||||| || | ||| | ||| | || || | | || || ||||| || Sbjct 17055759 AAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCA 17055818 Query 147949 ACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCG 148008 |||| || | ||||||| |||| | || ||| || | || ||| | | | |||| Sbjct 17055819 ACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCG 17055878 Query 148009 TTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCG 148068 |||||| || | ||| || || || | | || |||||||| || Sbjct 17055879 TTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGCTGACTGCCACGCCAATCCCT 17055938 Query 148069 CCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTG 148128 ||| | | || || ||| ||||||| || ||| |||||| || || |||||| Sbjct 17055939 CCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTG 17055998 Query 148129 TCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAG 148188 || | || | | | |||| || || ||| ||||| | ||||| || | Sbjct 17055999 TCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTG 17056058 Query 148189 AAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATA 148248 || ||||| || ||||| || ||| | || | || || | || ||||| || Sbjct 17056059 AAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATG 17056118 Query 148249 GCGTCTTCGATGT-CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 || ||||||| | |||| ||||| || |||| || || | ||||||||||||||| || Sbjct 17056119 GCCGCTTCGATATCCGTC-CCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 17056177 Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATA 148343 || || || |||| |||||||| || || || Sbjct 17056178 ACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTA 17056213 >seq11 Length=32426571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||||| || | |||||| |||||| |||| ||| |||| ||||||||||| Sbjct 23758258 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGAT 23758199 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 | || |||| ||||| ||||| ||| | ||||| || ||| Sbjct 23758198 TACTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATATATGGT 23758158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476595906738120