Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1437 116 3e-21 seq18 84.2 2e-11 >seq1437 Length=1065406 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 749825 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 749884 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || ||||||||| | |||| || ||||| ||| ||| || ||| | | | Sbjct 749885 TATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATT 749944 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || || | |||||||| Sbjct 749945 CTCGATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 750004 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 750005 AAAGATCTGCAT 750016 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 778906 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 778965 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || |||||| ||| ||| || ||| | | Sbjct 778966 GATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 779025 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | || ||||| Sbjct 779026 CTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 779085 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 779086 AAAGATCTGCAT 779097 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 779134 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 779193 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||| ||||| | |||| || ||||||||| ||| || ||| | | | Sbjct 779194 GATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATT 779253 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | |||||||| Sbjct 779254 CTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 779313 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 779314 AAAGATCTGCAT 779325 Score = 109 bits (120), Expect = 5e-19 Identities = 140/192 (73%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 778224 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 778283 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || |||||| ||| ||| || ||| | | Sbjct 778284 GATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGAT-TTGGCCTTGACGTT 778342 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | || ||||| Sbjct 778343 CTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 778402 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 778403 AAAGATCTGCAT 778414 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 777996 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 778055 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || |||||| ||| ||| || ||| | | Sbjct 778056 GATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 778115 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || || | || ||||| Sbjct 778116 CTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 778175 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 778176 AAAGATCTGCAT 778187 Score = 104 bits (114), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 778451 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 778510 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || |||||| ||| ||| || ||| | | | Sbjct 778511 GATCAGCCTCTGCTGGTCAG-GGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACATT 778569 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | || ||||| Sbjct 778570 CTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 778629 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 778630 GAAGATCTGCAT 778641 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 778678 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 778737 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || |||||| ||| ||| || ||| | | Sbjct 778738 GATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 778797 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | || ||||| Sbjct 778798 CTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 778857 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 778858 GAAGATCTGCAT 778869 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 749370 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 749429 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || ||||| ||| ||| || ||| | | | Sbjct 749430 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATT 749489 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || || | || ||||| Sbjct 749490 CTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 749549 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 749550 GAAGATCTGCAT 749561 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || ||||||||||| || ||||| Sbjct 749598 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 749657 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || ||||| ||| ||| || ||| | | | Sbjct 749658 GATCAGCCTCTGCTGGTCAG-GGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATT 749716 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || || | || ||||| Sbjct 749717 CTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 749776 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 749777 GAAGATCTGCAT 749788 >seq18 Length=37007722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 44303 CGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCTACCCA 44361 |||||| ||||||||||| |||||||| ||||||| |||||| |||| ||| | || Sbjct 8901079 CGTAGGTTGTATGTGGTCTATTTGCGGCATCCACGATCAGGGCTGGGCG-GAGAGAGCCG 8901137 Query 44362 TCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTT 44411 | | ||| || | ||||||||||||||||| || ||| | | |||||| Sbjct 8901138 TATTCGGGAAGATCCGCTACATGAACTACAAAGGCTGCCTTCGGAAGTTT 8901187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450779135160360