Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15 390 2e-103 seq11 125 1e-23 seq21 102 1e-16 >seq15 Length=39264731 Score = 390 bits (432), Expect = 2e-103 Identities = 1034/1574 (66%), Gaps = 15/1574 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| |||||||||| |||||||| | || | || || || || || Sbjct 17054706 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTG 17054765 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| ||||| || | ||| | || ||||| || || || || || | || Sbjct 17054766 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 17054825 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 17054826 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17054885 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | |||||| | ||| || || || || | ||||| ||||| || Sbjct 17054886 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 17054945 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | ||| | ||| | ||||| || ||||| || ||||| | || || Sbjct 17054946 TCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGAATGCCCTTACTCACCGGCGAGCCT 17055005 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | ||| || ||||| | ||| || |||| || || || || || || || || | Sbjct 17055006 TCATACGTCTCATAGGTGCCTAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCA 17055065 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || ||||| || || |||| | ||||| ||| || || | || || || ||| Sbjct 17055066 TAGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 17055125 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || || || ||||| ||||||||||| ||||| || || || || || || Sbjct 17055126 TAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGG 17055185 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | | | || || || |||||| | || || || || || || |||| || || Sbjct 17055186 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 17055245 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA---TCGTCCA 69249 | || | ||| | |||||| ||||| ||||| ||| ||| | || || Sbjct 17055246 AAGTTCCTGACAATTACTTTGGTCACGTATGCCAGTTTTTTAAAGTCATAAGTCCGCTCA 17055305 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || || || | ||| || ||||| || || || ||||| | Sbjct 17055306 GGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCGCCACCTC----GTC 17055361 Query 69310 TTTGCATATTGTATT-----ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 |||| || |||| | || || || || || || || || ||||| || ||||||| Sbjct 17055362 CTTGC-TAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGAT 17055420 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 | ||||| || ||||| |||| |||||||| ||||| | || |||| || ||||||| Sbjct 17055421 TCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCGTCCCAGTTT 17055480 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC 69484 | |||| || ||||| || | | ||| | | ||| || | || ||| | Sbjct 17055481 CTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCC 17055540 Query 69485 GCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | ||| | |||||| || || || ||| || || || ||||| ||||||| Sbjct 17055541 TCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCA 17055600 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 ||| || || || ||| ||||||| ||||| | || | | || || || |||| Sbjct 17055601 GTCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCA 17055660 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTC 69664 | || || || || ||||| || || || || || |||| || | || || |||| Sbjct 17055661 TGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTC 17055720 Query 69665 CTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 69724 | || || || || || || || || || | | |||| | ||||| || || || || | Sbjct 17055721 CCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACA 17055780 Query 69725 TCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTAT 69784 | || | | | || |||| ||| || || |||||||| | || | || ||||| || | Sbjct 17055781 TGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATACCGTGCTGTGTTGTTGT 17055840 Query 69785 AGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTC 69844 | || |||| ||| || | || || || || || || || || | ||| || || | Sbjct 17055841 ACACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCGGCAATGTAGCTCC 17055900 Query 69845 CTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAG 69904 | | | | || || | | | || || ||||| || ||| ||||| || | Sbjct 17055901 CCGTGGATCTGATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGG 17055960 Query 69905 CACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAA 69964 | ||| | |||| |||||| || || ||||| ||||| ||||| ||||| || || | Sbjct 17055961 CGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAGGA 17056020 Query 69965 AACAGCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 | ||||| |||| || | ||| | ||||| ||||| || | || || || ||||| Sbjct 17056021 AGCAGCTGGACAGCTGCGGCCTGT-TGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 17056079 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 |||||||| || || || ||||| ||||| || || || || | ||| |||||| | Sbjct 17056080 GTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGCTTCGATATCCGTCCCG 17056139 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || ||||| | || || | ||| | ||| ||||| || || || | ||| ||| Sbjct 17056140 TGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTG 17056199 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 || || | |||||| || |||||||| || || ||||| |||| || || || ||| Sbjct 17056200 ATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTATAGGAGAAATCT 17056259 Query 70204 CTTTCGTAAATAAT 70217 || || || || || Sbjct 17056260 CTGTCATAGATTAT 17056273 >seq11 Length=32426571 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || ||||||| || ||||||||||||||||||||||| || Sbjct 23758247 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTCCTG 23758188 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || ||||||||||||||||| ||| | || ||||||||||| |||| || || || || Sbjct 23758187 TTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGCGACTCAATGAT 23758129 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || ||||||||||| || || | | || | |||||||| ||||| | ||| |||| Sbjct 23758814 TAGGTTTCATAAGGGCCGAGCTCTGCTGCCAACTCACAACTGGCCTCCAGGGCAGCGTAG 23758755 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || || || || |||| | ||||| || || ||| | || || || ||||| Sbjct 23758754 TAGATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCAAACGGATAG 23758695 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | || ||||| ||||| |||| ||||| || ||||| || || || || || | | Sbjct 23758694 CGCATGAGGATAAAGGCATCAGCCAGACCCTGCACACCAATTCCAATTGGCCTGTGACGC 23758635 Query 69136 TTATTTGAACTTTCAGC 69152 || || || |||||||| Sbjct 23758634 TTGTTAGACCTTTCAGC 23758618 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||||||||| || | ||||| ||| |||| || || || ||||| | Sbjct 23759723 TCCAGCCATAGAAATGCATGCTACTAAGTTTTCCATAGTTTGGCTCAGCAATGTGAATGT 23759664 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | ||| || || || || ||| | | || | |||||| ||||| || | | | ||| Sbjct 23759663 TAAGCGACTGGCTCTGGTCAATGTATGTGCCACGATCTGCTGCCATCTTGAGGACAGTCT 23759604 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||| | ||| ||| | | ||| || | ||||||||| Sbjct 23759603 TCTGGGAGATTTCCCACACAGTTTTATACAGCTGCTTCAGATCATCTGG 23759555 >seq21 Length=37011614 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| || || ||||| | ||||| || | || || ||||||||||| || | ||| | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || |||||||| || ||||| |||||||||||||| || |||||||| | Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 39759 CAACAA 39764 | |||| Sbjct 18722732 CCACAA 18722727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686886758813880