Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq16 104 2e-17 seq17 96.9 3e-15 seq10 93.3 3e-14 >seq16 Length=36154882 Score = 104 bits (114), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 ||||||| ||||||||||||||| |||||| |||||||||||||| ||| | ||| | Sbjct 8604432 CTCTGACGAACGCCCAGGCATCTCGCTCTGAGGCAAACTTCTTAAAGGAGGCAGATGGAA 8604491 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| |||||||||||||| || |||| Sbjct 8604492 ATTTGTCCACTTGGCTCTTACACTCGTCCC 8604521 Score = 100 bits (110), Expect = 2e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||| || ||| || |||||| |||||||||||||| |||||| Sbjct 8602499 CCAGACCACCTCCACCTGTCCATTCAGCCTGTCCAGTTTCATAAAGTCATCTTTGTTGGT 8602558 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 || |||| ||||| | || ||||||||||||| ||||||||||||| ||||| | | Sbjct 8602559 AATCTGA-CCTCCAGATTTCAACCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGCTGG 8602617 Query 77430 TCACACC 77436 ||||||| Sbjct 8602618 TCACACC 8602624 >seq17 Length=40919683 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 87331 GCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCAAAC 87390 ||||||| ||| || |||||| | || || ||||| || ||| |||| || |||| ||| Sbjct 1103199 GCTCCCATTTTGCTGAAATCTCTTTTGGACTGAAAGGTGTAGGCTGTTAATACAGCGAAC 1103258 Query 87391 ACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGT 87443 |||||||| || | ||| | | ||| ||||| |||||||| ||||||||||| Sbjct 1103259 ACAGCACAGGTGAGAAACAAGGCTTGCAGTATCGTGGAGTAATCATAGAAGGT 1103311 >seq10 Length=27519051 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| |||| || || || | || ||||| || || ||| | || || ||||| Sbjct 14138274 GATGGCGCTGCCCCCCTGCCACGCACTCTGCCAGTTCTATGTGTGCGACGGCGAGCTGTC 14138215 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 ||||| |||| || | |||| ||| |||||| ||||||| || || ||||| || || Sbjct 14138214 GTGTCAGCTGTACCAGCGCTCAGCTGATATGGGATTAGGGGTGCCTTTCAACATTGCCAG 14138155 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || || || || |||||||||||| |||| Sbjct 14138154 CTATTCACTTCTTACCTACATGATTGCACACATTAC 14138119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443565464835