Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15 214 2e-50 >seq15 Length=39264731 Score = 214 bits (236), Expect = 2e-50 Identities = 960/1494 (64%), Gaps = 48/1494 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| ||| || || ||| | | ||||| |||| ||||| |||||| Sbjct 17054708 CTTCATCTCCTCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGAC 17054767 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | ||| | | ||||||||| ||||||| | || | Sbjct 17054768 GATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGAT 17054827 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 17054828 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 17054887 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 17054888 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 17054947 Query 110854 C-TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | |||| || || |||||||||| ||||||| | || | | | || || || | Sbjct 17054948 CGTTGGAGTCTTCT-CCCACATGTCGTACTGAAGAATGCCCTTACTCACCGGCGAGCCTT 17055006 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 110972 || | || ||||||| ||| | | |||||| || |||||||| |||| | || | Sbjct 17055007 CATACGTCTCATAGGTGCCTAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCAT 17055066 Query 110973 GATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAATC 111024 || || || |||||||| | |||| || | | | ||||| || Sbjct 17055067 AGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTT--------TC 17055118 Query 111025 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084 ||| | || || | || || |||| || | || || || || | || || || Sbjct 17055119 AAAGGGATAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGG 17055178 Query 111085 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGAC 111144 ||||| ||||| || ||| | | || || || || || | || |||| || || Sbjct 17055179 CCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAAC 17055238 Query 111145 TCGGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGA-AGTTTTTCATAATCAA 111200 ||| | || || ||||| ||||| | | | ||| ||||||| | | ||| Sbjct 17055239 CTTGTTCAAGTTCCTG---ACAATTACTTTGGTCACGT-ATGCCAGTTTTTTAAAGTCAT 17055294 Query 111201 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 111260 |||| || ||| |||| ||| | || ||||| || |||| |||||| || | Sbjct 17055295 AAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCG 17055351 Query 111261 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCG 111320 || ||| ||||| |||||||| | ||||| || || | |||| | ||| || | Sbjct 17055352 CCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGG 17055411 Query 111321 TCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 111380 | |||| ||||| ||||| |||||| ||||||| || || ||||||| |||||| |||| Sbjct 17055412 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCG 17055471 Query 111381 TCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATG 111439 |||| || || ||||| || | || || || | ||| | | | | | || || Sbjct 17055472 TCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACAC 17055531 Query 111440 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 111499 || || ||| |||||| ||| || | |||||||| ||||||||||||| ||| | Sbjct 17055532 GC-TTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCC-CA 17055589 Query 111500 GCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTC 111558 || || || || || | | |||| || | || ||||| | | | ||| Sbjct 17055590 GCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTC 17055649 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 111618 |||||||||||||| ||||| || |||||||||| | || || || || || Sbjct 17055650 CACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTG 17055709 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 111677 ||| || | || ||| || | | ||| ||||| || | | ||| |||||| | Sbjct 17055710 CTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGG 17055768 Query 111678 GCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGC 111733 |||| || || | |||| | || |||| | |||| | |||| ||||| || Sbjct 17055769 GCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCC-CCCTGATCAACATACCGT 17055827 Query 111734 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 111793 |||||| ||| | || | | |||||| | || || | || || || || || Sbjct 17055828 GCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCG 17055887 Query 111794 CGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCC 111850 ||| || | ||| ||| | || | || || || ||||| || || || Sbjct 17055888 GCAAT-GTAGCTCCCCGTGGATCTGATGCAGC-TGACTG-CCACGCCAATCCCTCCGGCT 17055944 Query 111851 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 111910 | || ||||| | || || | | | || || | ||||| || | || ||| ||| Sbjct 17055945 GATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCC 17056004 Query 111911 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 111970 || |||||| |||||||| ||||||| |||||| || || ||||||||||||||| Sbjct 17056005 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGG 17056064 Query 111971 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 112029 || || | ||||| ||||| || | | |||| | || ||| ||||| | | | | Sbjct 17056065 GTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGC 17056123 Query 112030 ATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || || ||||||||| || | || |||| ||||| ||||| ||| || Sbjct 17056124 TTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 17056177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011848023200