Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq15 194 2e-44 seq16 84.2 3e-11 seq21 82.4 9e-11 >seq15 Length=39264731 Score = 194 bits (214), Expect = 2e-44 Identities = 888/1383 (64%), Gaps = 28/1383 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 17054802 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 17054861 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | || || ||| Sbjct 17054862 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 17054921 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 || || ||| ||| |||| | | | ||| | || |||||| || |||| || Sbjct 17054922 TTCAGCAGCTTCC-AGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAG 17054980 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420 || || | | | ||||| || ||| | |||||||| | ||| | | |||| Sbjct 17054981 AATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTAGCTCGGCAGCCAG 17055040 Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 ||| ||||||| || | || || | || ||||| ||||| || | || | || Sbjct 17055041 CTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGA--GC 17055098 Query 118481 C-TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537 ||| |||||| | ||||| | || ||| | || || |||| || | || Sbjct 17055099 AGTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATGAGGATGAAGGCATCAGCCAATCC 17055157 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGG 118597 ||||| |||| || || || | || | ||| || ||| ||| || ||||| || Sbjct 17055158 CTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGG 17055217 Query 118598 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 118657 || | || | ||||||||| | || | || || | || || || | | ||| Sbjct 17055218 GTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGT-ATG 17055276 Query 118658 A-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 || |||| | ||| || | || ||| |||| ||| | || ||||| | Sbjct 17055277 CCAGTTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATAG 17055333 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 | |||||||| || || | ||| ||||| ||||||||| | ||||||||||| | Sbjct 17055334 AGGCCAGATTGCAGACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAA 17055393 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 ||| | ||| |||||||||| |||| || || ||| |||| || || || | Sbjct 17055394 GGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 17055453 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| | |||||| |||||||| || || || || |||| || || || | ||| | | Sbjct 17055454 TGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCT 17055513 Query 118897 CGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCT 118955 ||| || || || || | | |||||| ||| || | |||||||| || Sbjct 17055514 GCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCT 17055572 Query 118956 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 119015 |||||||| || ||| | ||| || || || | ||||||| | || ||| Sbjct 17055573 TCAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGAC 17055632 Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075 || | | | ||| |||||||||||||||||||| |||||||| || || |||| Sbjct 17055633 CAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAC 17055692 Query 119076 AGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 || |||| | | ||| || | | ||| || || || ||||| ||||| | Sbjct 17055693 AGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAA 17055751 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAG 119190 | ||| |||||| || |||||||||| |||| | || ||| | | || Sbjct 17055752 CACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTG-CCCC 17055810 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||| | ||||||| || ||| ||| | || | | |||||| | | || | || Sbjct 17055811 CCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGG 17055870 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCGTGGATGTGCAT 119308 | ||| || || || ||| | ||| ||||| || | || || || Sbjct 17055871 AACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGC-TGACTG-CCAC 17055928 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 ||||| || || || | || ||||| | ||||| | | | || || |||||||||| Sbjct 17055929 GCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCC 17055988 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 || || |||| |||| | |||| ||||||||||| |||| || |||||| || Sbjct 17055989 CTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 17056048 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGT 119487 ||||| |||||||| || || | |||||| ||||| || | | |||| | || || Sbjct 17056049 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGT 17056107 Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547 ||||||| | | | || || || |||||| || || | | |||| ||| | || Sbjct 17056108 AGGTCTCGATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCA 17056167 Query 119548 TGT 119550 ||| Sbjct 17056168 TGT 17056170 >seq16 Length=36154882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | |||| Sbjct 10883206 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTTTTCT 10883147 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || || || ||||| |||||||||||||||||||| Sbjct 10883146 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCAC 10883098 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | |||| Sbjct 10897272 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTTTTCT 10897331 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || || || ||||| |||||||||||||||||||| Sbjct 10897332 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCAC 10897380 >seq21 Length=37011614 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||||| || || ||| || || || ||||| || |||| ||||| Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||| | || ||| |||||| |||||||||||||| || |||||| Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 18722743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415355960520