Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq15 158 1e-33 seq11 95.1 1e-14 >seq15 Length=39264731 Score = 158 bits (174), Expect = 1e-33 Identities = 942/1486 (63%), Gaps = 32/1486 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||||| | || || || ||| || || || | | | Sbjct 17056177 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATATCGAAGCGGCC 17056118 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||||| | || |||||||| Sbjct 17056117 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 17056059 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || || || || ||||||| |||||||| |||||| ||||| || Sbjct 17056058 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 17055999 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | || ||||| | || || | | | || || | ||||| || | || || Sbjct 17055998 CAGCATTGAGGGGATCTACGACACACTGAAGCATTGCGCCCTCATCTCCAAATCAGCCGG 17055939 Query 104461 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 104517 || ||||| || || || | || | ||| ||| | || ||| || || Sbjct 17055938 AGGGATTGGCGTGG-CAGTCA-GCTGCATCAGATCCACGGGGAGCTAC-ATTGCCGGCAC 17055882 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || | || || | |||||| | | || | ||| |||||| || || Sbjct 17055881 CAACGGCTGTTCCAACGGGCTTGTCCCAATGTTGAGGGTGTACAACAACACAGCACGGTA 17055822 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 ||| |||| | |||| | |||| || | |||| | || || ||||| |||| Sbjct 17055821 TGTTGATCAGGG-GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGC 17055763 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || ||| | | || ||||| ||| || ||| || | |||||| ||| Sbjct 17055762 ACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAG 17055703 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | || || |||| ||| || ||||| || || |||||||||||| | || ||| | | Sbjct 17055702 CCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACA 17055643 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 | | ||||| || | || |||| | | || || || || ||| | ||| Sbjct 17055642 ACGAAGACTGGTCCCTGATGTGCCCAGCCGACTGCCCCGGACTGGATGAGTGCTGGGGG- 17055584 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC-GGT 104871 ||||||||||||| || ||||| | || ||| || || ||| || ||| ||| Sbjct 17055583 GAGGAGTTTGAAGAACTCTACACCAGATATGAGAGGGAGGGGAGGGTGAA-GCGTGTGGT 17055525 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 | ||| | | ||| | || || || |||| || || || ||||| || || || Sbjct 17055524 GAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACTGGGACGCCGTA 17055465 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||| | |||||||||||||| ||| ||||| || || ||||| |||| ||||| Sbjct 17055464 CATGGTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAA 17055405 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | | ||| || || || |||||| | || | || ||| || ||| ||| || || Sbjct 17055404 GTGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTCTG 17055345 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111 || || || || ||||||||| || ||| || || ||| ||| | ||| | Sbjct 17055344 CAATCTGGCCTCTATCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACTT 17055288 Query 105112 TGAAAAACTCCACGAAGTTACGAA---AACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | ||||||| | || || || || ||| || ||| | |||| ||||| || Sbjct 17055287 TAAAAAACTGGCATACGTGACCAAAGTAATTGT---CAGGAACTTGAACAAGGTTATCGA 17055231 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || | ||||| || || || | | || || ||| | ||| | || || || Sbjct 17055230 CATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATAGG 17055171 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 |||| || ||||| | || |||| ||||| || || | | ||||| | Sbjct 17055170 AATCGGGGTCCAGGGATTGGCTGATGCCTTCATCCTCATGCGTTATCCCTTTGAAAGCCC 17055111 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||| || | |||| | || |||||||| || || | |||||| | || || Sbjct 17055110 CGAGGCTCAACTGCTCAACATCCAGATCTTTGAGACAATCTACTATGCCGCTTTGGAAGC 17055051 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 ||| | ||| |||| | | || | ||||| || | ||| || || || | | Sbjct 17055050 GAGCTGCGAGCTGGCTGCCGAGCTAGGCACCTATGAGACGTATGAAGGCTCGCC-GGTGA 17054992 Query 105409 ACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGG 105466 ||||| | ||||| | || ||||||| || || |||| | | | |||| | Sbjct 17054991 GTAAGGGCATTCTTCAGTACGACATGTGGG-AGAAGACTCCAACGGACCTGTGGGACT-G 17054934 Query 105467 GAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 |||||| || ||||| ||| | | || | | ||||| || || |||| || Sbjct 17054933 GAAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGGCCCC 17054874 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||||| || ||||||||||| || ||| |||| || || || | | | || ||||||| Sbjct 17054873 GATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACAC 17054814 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645 | |||||||| | | ||| |||| |||||| ||| |||||| || || Sbjct 17054813 AAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCT 17054754 Query 105646 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | | ||||| | |||| || || ||| |||| |||||| Sbjct 17054753 GCTCAAAGACCTGACGGAGAGGGGCCTGTGGAATGAGGAGATGAAG 17054708 >seq11 Length=32426571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || || | |||| || || || |||||||||||||| ||||||||||| | Sbjct 23758118 TGTGGTATGCCATCATTGAGTCGCAGACAGAAACTGGTACACCATATATGCTTTACAAGG 23758177 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 ||||||| ||| ||||||||||| | ||| |||| ||||| |||||| | Sbjct 23758178 ACGCCTGCAACAGGAAGAGTAATCAGCAAAATCTGGGCACCATCAAATCCAGCAATCTGT 23758237 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 | ||||| ||| | || | ||| |||||||||| Sbjct 23758238 GCACAGAGATCGTAGAGTACACAAGCAAAGATGAG 23758272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242084619080