Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15 185 1e-41 seq9 87.8 2e-12 seq21 86.0 7e-12 seq16 84.2 2e-11 >seq15 Length=39264731 Score = 185 bits (204), Expect = 1e-41 Identities = 516/780 (66%), Gaps = 20/780 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGT-GAGACGTAC 53251 ||||| | || || |||| |||||||| |||| || | | || | ||||| ||| Sbjct 17056164 TCATGAGGGTGGCTGTGGGAATCCACGG-GACGGATATCGAAGCGGCCATCGAGACCTAC 17056106 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | || | |||| || || |||||| | || ||||| ||||| ||||| || Sbjct 17056105 AACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACC 17056046 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || || ||| |||| |||||||||||| | || |||||||||||| || || || Sbjct 17056045 AACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATTGAGGGG 17055986 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || || ||| | || |||| ||||||||| | | || || || || | Sbjct 17055985 ATCTACGACACACTGAAGCATTGCGCCCTCATCTCCAAATCAGCCGGAGGGATTGGCGTG 17055926 Query 53432 -CACT--GCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 || | ||| | || | | | || | || || || |||||| || Sbjct 17055925 GCAGTCAGCTGCA---TCAGATCCACGGGGAGCTACATTGCCGGCACCAACGGCTGTTCC 17055869 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || | || || ||| | | || | ||||||||| || ||||| || | ||||| Sbjct 17055868 AACGGGCTTGTCCCAATGTTGAGGGTGTACAACAACACAGCACGGTATGTTGATCAGGG- 17055810 Query 53549 GGTGGGAAGCGCAAG----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACAT 53604 ||| | | ||| || | |||||||| ||||| ||||| |||||| || | Sbjct 17055809 ---GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTTGATGT 17055753 Query 53605 TATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCT 53664 | || || || |||||| ||| ||| | || ||| ||| | | ||||| Sbjct 17055752 GTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGCCAGGGACCT 17055693 Query 53665 GTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGT 53723 ||| ||| || |||||||| || |||||||||||| | ||||||||| |||| || | Sbjct 17055692 GTTCTAC-GCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAACGAAGACT 17055634 Query 53724 GGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTT 53782 ||| |||||||||||| ||| |||||||| || | | ||| || || ||||||||| Sbjct 17055633 GGTCCCTGATGTGCCCAGCCGACTGCCCCGGACTGGATGAGTG-CTGGGGGGAGGAGTTT 17055575 Query 53783 AACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842 | || | || | || | |||| | ||| ||| ||||| | Sbjct 17055574 GAAGAACTCTACACCAGATATGAGAGGGAGGGGAGGGTGAAGCGTGTGGTGAAGGCTCAG 17055515 Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902 || ||||| |||||||| || || ||| || || || |||||||||||| |||| Sbjct 17055514 CAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACTGGGACGCCGTACATGGTCTAC 17055455 Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || || | |||| ||||||||||||| |||| | ||| |||||| | |||||| Sbjct 17055454 AAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAAC 17055395 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 17054888 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 17054829 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| |||||| || | || |||||| || Sbjct 17054828 CATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGAT 17054769 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| ||||| |||| |||||| Sbjct 17054768 CGTCAACCCCCACCTGCTCAAAGACCTG 17054741 >seq9 Length=30802437 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||||||||||| ||||| |||||||||||| Sbjct 20415175 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCGTGCAGCCTGGTTCCAAACTGT 20415116 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 ||||| |||| | ||| || | ||||||| ||||| || ||||| || ||| Sbjct 20415115 CCCAGA-GGCTGCAAGAGATTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAA 20415062 >seq21 Length=37011614 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || ||||| || || ||| | || ||||| || || Sbjct 3778003 GTGAAGATGTAACGAGGACTGGCTGCATCTTTTCCTCCATTGATGCGAGTACCAAACTGA 3778062 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| ||||||| |||||||||||| || |||||||| || Sbjct 3778063 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGCGCCAAGTTCACT 3778122 Query 117425 ATCGT 117429 || || Sbjct 3778123 ATGGT 3778127 >seq16 Length=36154882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 10884122 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 10884063 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 10884062 AAGTCAAAAGGGTTCT 10884047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 10896365 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 10896424 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 10896425 AAGTCAAAAGGGTTCT 10896440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198441206600