Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq15 181 1e-40 seq1437 170 2e-37 seq16 84.2 2e-11 >seq15 Length=39264731 Score = 181 bits (200), Expect = 1e-40 Identities = 558/853 (65%), Gaps = 19/853 (2%) Strand=Plus/Plus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGC 80965 || ||||||||||| || |||||||| || || |||| ||||||||||||||||| Sbjct 17055333 GAGGCCAGATTGCAGACCGCCACCTCGTCCTTGCTAGTGTA--CTCGACGATTTCCGTGC 17055390 Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025 | | || |||| || || ||||| || | |||||| ||| |||||| |||| Sbjct 17055391 AAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 17055450 Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 | |||||| ||||||||| || || || || ||| |||| || ||| || | ||| | Sbjct 17055451 CTTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATA 17055510 Query 81086 TCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAG 81142 || | ||||| ||||| ||| | | || || | |||| ||| ||| Sbjct 17055511 GCTGCTGAGCCTTCACCACACGCTT---CACCCTCCCCTCCCTCTCATATCTGGTGTAGA 17055567 Query 81143 CTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 ||| || |||| | || ||| || | ||||| ||| |||||||||| Sbjct 17055568 GTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCA 17055627 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 || |||||| || |||||| || ||||||||| |||||||||||| |||||| Sbjct 17055628 GGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGT 17055687 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||||||||| | | ||| |||||| | ||| ||| || ||| || |||| Sbjct 17055688 AGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 17055747 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGG 81378 | | | || ||||| |||||||| |||| ||||| | || ||| | | Sbjct 17055748 CAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTG-TTG 17055806 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 || ||||| | || || || || || ||| | || | |||||| |||| | || Sbjct 17055807 CCCCCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCG 17055866 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA 81498 | || ||||| || || | || |||| ||| | | ||||| || Sbjct 17055867 TTGGAACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGCTGACTGCC 17055926 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 | || || || || | | || || || | || || | |||| || || || || Sbjct 17055927 ACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATC 17055986 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTT 81618 ||||| ||||| || | |||||| | |||| ||| ||||| |||| ||| || || || Sbjct 17055987 CCCTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTG 17056046 Query 81619 GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || |||||||| || || |||| ||||| |||| | | ||||| ||||| Sbjct 17056047 GTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 17056106 Query 81679 TAGGTTTC-CTTGACGCGTGGAATAT-CGTCACCGTGAATACCGATAGCTACACGCATAA 81736 ||||| || | | ||| | | |||| |||| ||||| || || | ||| || | ||| | Sbjct 17056107 TAGGTCTCGATGGCCGCTTCG-ATATCCGTC-CCGTGGATTCCCACAGCCACCCTCATGA 17056164 Query 81737 ACATGTACTGGGG 81749 ||||| ||| || Sbjct 17056165 GCATGTGCTGCGG 17056177 >seq1437 Length=1065406 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || || ||||||||| || | Sbjct 779325 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC 779266 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 779265 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAA 779206 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 779205 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 779146 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| ||||||| | ||||| Sbjct 779145 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGG 779099 >seq16 Length=36154882 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || ||||| || || |||||||||||| | || Sbjct 19136898 ATGCAGATCTTCGTGAAGACATTGACGGGGAAGACCATCACCCTTGAGGTTGAGCCCAGT 19136957 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| |||| | ||||| || |||||||||||||| || Sbjct 19136958 GACACTATTGAAAATGTCAAGGCAAAGATTCAGGACAAGGAAGG 19137001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570292100165040