Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq12 107 2e-18 >seq12 Length=36466354 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 32668 GAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCA 32727 |||| |||||| ||||| ||||| || || || || ||||| || ||| | || |||| Sbjct 16128610 GAGCTCTGTGGTGGTATTTCATCTCCAAGGGCATTGAGTATCTGGACACTGTGTTTTTCA 16128551 Query 32728 TAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGT 32787 | |||| || ||||| ||||| || | ||| ||||||| ||||| |||| |||||| Sbjct 16128550 TCCTGAGGAAAAAATTCAACCAGGTCACCTTCCTGCACGTCTACCATCATTGCTCCATGT 16128491 Query 32788 TTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 | || | | ||||| || || || ||| | |||||||||||| Sbjct 16128490 TCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 16128447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603161445436080