Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq10 132 4e-26 seq13 105 5e-18 >seq10 Length=27519051 Score = 132 bits (146), Expect = 4e-26 Identities = 135/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||| ||||| || || |||||||||||||| || ||||| ||||| ||||| Sbjct 14138927 CATGTCTGTGTATTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 14138986 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || || | ||| || ||||||| ||||| | || |||||||| || Sbjct 14138987 ACCCTCCTCTCTATCAGTGAACCCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATC 14139046 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||||||||| || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 14139047 CCAGATCTTCACTCCTTTTTCTGATAGCTCCTTGGAATTTGTTGATCCCTGTGAC 14139101 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | ||| || |||||||| || || || || |||||||| ||||| || || Sbjct 14138113 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCAATGTTGAAAGGC 14138172 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| | ||||| || | || | |||||| ||||||||||| ||||| ||||||| | Sbjct 14138173 ACCCCTAATCCCATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 14138232 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 || || ||||| || | |||||||| || || || ||||| Sbjct 14138233 ACATAGAACTGGCAGAGTGCGTGGCAGGGGGGCAGCGCCAT 14138273 >seq13 Length=41232431 Score = 105 bits (116), Expect = 5e-18 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 110406 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 110465 ||||||||||||||| | ||| || |||| |||||||||| ||||| || ||||| || Sbjct 2760030 CTCCCTGCTGAGGACAATGTTGATTCTGTTGCTCAGAGGTCGGTTCTTCTCTGGGATAGA 2759971 Query 110466 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 | |||| ||||| | ||||| |||||||| |||||||||||| Sbjct 2759970 GTACCACGTCTTCTTGCCCATGATCACCACATTCTGCTTGCCT 2759928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||||||||||||| | || ||||| |||| || | || ||||| ||| ||| Sbjct 2760632 ACTCTGGCAGTAGACGATATTTGTCCAGACTGATCTCAGGTAAGAATGTGTCACACTCAA 2760573 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCC 110277 | ||| || | |||||||||||||| || | || || | |||| |||| | |||| Sbjct 2760572 ACTGCTTCAGAATTTGAGTGACAAACAGTCTTCTCATTCCAGTGCTCCCCATCATCTCC 2760514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406297688452164