Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1437 98.7 6e-16 >seq1437 Length=1065406 Score = 98.7 bits (108), Expect = 6e-16 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| || | ||||| ||| |||||| || ||||| || || || Sbjct 779098 GCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 779157 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||||||||| || || Sbjct 779158 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGG 779217 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTC--TTCGCTCTC 34655 | || |||||||| ||| ||| | || || | ||| ||||| || |||| Sbjct 779218 AATGCCTTCCTTGTCCTGGAT-TTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCA- 779275 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| ||| || || || || || | ||||||||||| ||||||||||| Sbjct 779276 -ACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 779328 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| || | || || ||| |||||| || ||||| || || || Sbjct 749789 GCCACCCCTGAGACGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 749848 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || |||||||| | | ||| ||||| || || Sbjct 749849 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGG 749908 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTC--TTCGCTCTC 34655 | || ||||| || ||| ||| | || || | || ||||| || |||| Sbjct 749909 AATGCCTTCCTTATCCTGGAT-TTTGGCCTTGACATTCTCGATGGTGTCACTTGGCTCA- 749966 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| ||| || || || || || | ||||||||||| ||||||||||| Sbjct 749967 -ACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 750019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719753586111