Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10 118 1e-21 >seq10 Length=27519051 Score = 118 bits (130), Expect = 1e-21 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || || || | || || ||||||||||| ||||||||||| ||| Sbjct 14138125 TGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCAATGTTGAAAGGCACCCCTAATCCC 14138184 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 || || | || || || || ||||| || |||||||| || |||| || ||||| || Sbjct 14138185 ATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCC-GTCGCACACATAGAACTG 14138243 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||| | |||||| ||||| ||||||||| ||| || || Sbjct 14138244 GCAGAGTGCGTGGCAGGGGGGCAGCGCCATCCTAGGAAGGTC 14138285 Score = 118 bits (130), Expect = 1e-21 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || || ||| ||||||||| ||||| |||||| | |||||||| ||||| || |||| Sbjct 14138285 GACCTTCCTAGGATGGCGCTGCCCCCCTGCCACGCACTCTGCCAGTTCTATGTGTGCGAC 14138226 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 || |||||||| || ||||| || || || || | || ||||| ||||||||||| || Sbjct 14138225 -GGCGAGCTGTCGTGTCAGCTGTACCAGCGCTCAGCTGATATGGGATTAGGGGTGCCTTT 14138167 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||||||| || || | || || || |||||||| || || Sbjct 14138166 CAACATTGCCAGCTATTCACTTCTTACCTACATGATTGCACA 14138125 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || || | ||| |||||||| Sbjct 14138937 TATTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTCACCCTCCTCT 14138996 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | |||||| | |||||||| ||||| |||||||||| || |||||||||||| Sbjct 14138997 CTATCAGTGAACCCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATCCCAGATCTTC 14139056 Query 7019 ACCCC 7023 || || Sbjct 14139057 ACTCC 14139061 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||||||||| || |||||||||| ||||| |||||||| | |||||| | Sbjct 14139061 GGAGTGAAGATCTGGGATGCCAACGGGTCTCGGGACTTCCTGGACAACCTTGGGTTCACT 14139002 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 | | |||||||| ||| | || || || || || ||||||||||| |||||||| || Sbjct 14139001 GATAGAGAGGAGGGTGACCTAGGACCTGTGTATGGTTTCCAGTGGAGGCACTTTGGTGCA 14138942 Query 34442 GAGTA 34446 || || Sbjct 14138941 GAATA 14138937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448248016380240