Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1437 178 3e-39 seq2 98.7 2e-15 >seq1437 Length=1065406 Score = 178 bits (196), Expect = 3e-39 Identities = 171/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 779114 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 779173 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | ||||||||||| |||| |||||||||||| Sbjct 779174 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 779233 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || || || || |||||||| |||| |||||||| || ||||| Sbjct 779234 TGGATTTTGGCCTTGACATTCTCAATGGTGTC---GCTTGGCTCAACCTCCAGGGTGATG 779290 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| || || ||||| | |||||| || Sbjct 779291 GTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 779328 Score = 172 bits (190), Expect = 1e-37 Identities = 168/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 777976 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 778035 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| || ||||| ||| Sbjct 778036 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCC 778095 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || ||||| || ||||||||| ||| |||||||| || ||||| Sbjct 778096 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCA---CTTGGCTCAACCTCCAGGGTGATG 778152 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| ||||| | |||||| Sbjct 778153 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 778187 Score = 172 bits (190), Expect = 1e-37 Identities = 168/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 778886 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 778945 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| || ||||| ||| Sbjct 778946 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCC 779005 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || ||||| || |||||||| |||| |||||||| || ||||| Sbjct 779006 TGGATTTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCCAGGGTGATG 779062 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| ||||| | |||||| Sbjct 779063 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 779097 Score = 168 bits (186), Expect = 2e-36 Identities = 167/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 749350 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 749409 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| |||||||| ||| Sbjct 749410 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 749469 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || || || || ||||||||| ||| |||||||| || ||||| Sbjct 749470 TGGATTTTGGCCTTGACATTCTCAATGGTGTCA---CTTGGCTCAACCTCCAGGGTGATG 749526 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || | |||||| Sbjct 749527 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 749561 Score = 168 bits (186), Expect = 2e-36 Identities = 169/218 (78%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| |||||||| || |||||||| || || | ||||| | |||||| Sbjct 749805 AGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 749864 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || || | || |||||||| |||| |||||||| ||| Sbjct 749865 TCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 749924 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || || || |||||||||||| ||| |||||||| || ||||| Sbjct 749925 TGGATTTTGGCCTTGACATTCTCGATGGTGTCA---CTTGGCTCAACCTCCAGGGTGATG 749981 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| || || ||||| | |||||| || Sbjct 749982 GTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 750019 Score = 168 bits (186), Expect = 2e-36 Identities = 168/215 (78%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 778204 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 778263 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| || ||||| ||| Sbjct 778264 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCC 778323 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || ||||| || |||||||| |||| |||||||| || ||||| Sbjct 778324 TGGAT-TTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCCAGGGTGATG 778379 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| ||||| | |||||| Sbjct 778380 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 778414 Score = 168 bits (186), Expect = 2e-36 Identities = 167/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 778658 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 778717 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| || ||||| ||| Sbjct 778718 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCC 778777 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || ||||| || |||||||| |||| |||||||| || ||||| Sbjct 778778 TGGATTTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCCAGGGTGATG 778834 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || | |||||| Sbjct 778835 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 778869 Score = 165 bits (182), Expect = 2e-35 Identities = 167/215 (78%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 749578 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 749637 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| |||||||| ||| Sbjct 749638 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTTATCC 749696 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || || || || ||||||||| ||| |||||||| || ||||| Sbjct 749697 TGGATTTTGGCCTTGACATTCTCAATGGTGTCA---CTTGGCTCAACCTCCAGGGTGATG 749753 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || | |||||| Sbjct 749754 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 749788 Score = 159 bits (176), Expect = 8e-34 Identities = 166/215 (77%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 778431 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 778490 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| || ||||| ||| Sbjct 778491 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCCTCCTTATCC 778549 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || || || || || |||||||| |||| |||||||| || ||||| Sbjct 778550 TGGATTTTGGCCTTGACATTCTCAATGGTGTC---GCTTGGCTCAACCTCCAGGGTGATG 778606 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| || || | |||||| Sbjct 778607 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 778641 >seq2 Length=35256741 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||||| |||| ||| ||| ||||| |||||| Sbjct 22002666 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCTCGACTGAGAATGGAGAAGAGACACAAC 22002607 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | ||| ||| | ||| |||| |||| | Sbjct 22002606 TATGTGAGAAAAGTAGCTGAGACAGCTGTCCAGCTCTTTGTGTCCAATGACA--AAGT-T 22002550 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || |||||||| | ||| | ||| Sbjct 22002549 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCTGATTTCAAGACTGAACTCAGCCAGTCT 22002490 Query 139999 GACTTTTTTGACCC 140012 ||| | ||||| || Sbjct 22002489 GACATGTTTGATCC 22002476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159113875852955