Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq10 111 1e-19 seq13 96.9 3e-15 >seq10 Length=27519051 Score = 111 bits (122), Expect = 1e-19 Identities = 117/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || ||||| ||||| ||||| ||||| || || | ||| Sbjct 14138949 AAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTCACCCTCCTCTCTATCAGTGAAC 14139008 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| ||||| | || |||||||| ||||||||||| || || || || Sbjct 14139009 CCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATCCCAGATCTTCACTCCTTTTTCT 14139068 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30168 || ||||| ||||| ||||| || |||| |||| Sbjct 14139069 GATAGCTCCTTGGAATTTGTTGATCCCTGTGAC 14139101 >seq13 Length=41232431 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||||||||||||||| | ||| | |||| |||||||||| ||||| || ||||| || Sbjct 2760030 CTCCCTGCTGAGGACAATGTTGATTCTGTTGCTCAGAGGTCGGTTCTTCTCTGGGATAGA 2759971 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 | |||| ||||| | ||||| |||||||| |||||||| ||| Sbjct 2759970 GTACCACGTCTTCTTGCCCATGATCACCACATTCTGCTTGCCT 2759928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406150493057362