Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 468 7e-127 seq11 89.7 7e-13 >seq15 Length=39264731 Score = 468 bits (518), Expect = 7e-127 Identities = 1289/1963 (66%), Gaps = 27/1963 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || |||||||||| |||||| || | || | || || || || || Sbjct 17054706 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTG 17054765 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| || || || | || | || ||||| || || || || || | || Sbjct 17054766 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 17054825 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 17054826 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17054885 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | |||||| | ||| || || || || ||||| ||||| || Sbjct 17054886 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 17054945 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || ||||| || ||||| | || || Sbjct 17054946 TCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGAATGCCCTTACTCACCGGCGAGCCT 17055005 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | ||| || ||||| | ||| || | |||| || || || ||||||||||| || Sbjct 17055006 TCATACGTCTCATAGGTGCCTAGCTCGG---CAGCCAGCTCGCAGCTCGCTTCCAAAGCG 17055062 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 | || || ||||| || || |||| | ||||| ||| || || || ||||| Sbjct 17055063 GCATAGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAG 17055122 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 |||||| | | || || |||||||| || |||||||| || || || || || || || Sbjct 17055123 GGATAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTG 17055182 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | | | || || | | |||||| | || || || || ||||| |||| || Sbjct 17055183 TGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTG 17055242 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || | || || |||| |||||| ||||| ||||| ||| ||| | | | Sbjct 17055243 TTCAAGTTCCTGACAATTACTTTGGTCACGTATGCCAGTTTTTTAAAGTCATAAGTCCGC 17055302 Query 77658 TCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | || ||||||| | ||| ||||| || ||||| || || || ||||| | Sbjct 17055303 TCAGGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCGCCACCTCGTCC 17055362 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | | | || | | || || || || || || || || ||||| ||||||||||| Sbjct 17055363 TTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTC 17055422 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| | ||||| | ||| || || | || |||| ||||| ||||| Sbjct 17055423 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCGTCCCAGTTTCT 17055482 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCG 77893 |||| || ||||| || | | ||| | | || ||| || | || | || | Sbjct 17055483 GTCTGCGACTCGATGATTGCATACCATA-GCTGCTGAGCCTTCACCACACGCTTCACCCT 17055541 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| || |||||| || || || |||||| || || ||||| ||||||| Sbjct 17055542 CCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAG 17055601 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 ||| ||||| || ||||||||||| |||||||| | | | || || || ||||| Sbjct 17055602 TCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCAT 17055661 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 ||||| ||||| ||||| || || || || || | || || || || || ||||| Sbjct 17055662 GAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCC 17055721 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 || ||||| || || || || || || | | |||| | ||||| || || || || || Sbjct 17055722 CGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACAT 17055781 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || |||| ||| || || |||||||| | ||| | || ||||| || || Sbjct 17055782 GGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATACCGTGCTGTGTTGTTGTA 17055841 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 || ||||||||||| | || ||||| || || || || || | ||| || || || Sbjct 17055842 CACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCGGCAATGTAGCTCCC 17055901 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | | | || || | | | || || ||||| || || || || || || Sbjct 17055902 CGTGGATCTGATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGC 17055961 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 |||| | |||| ||| |||||||| ||||| || ||||||||| ||||| || || || Sbjct 17055962 GCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAGGAA 17056021 Query 78374 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 ||||| |||| || || || ||||| ||||| || | ||||| || || | Sbjct 17056022 GCAGCTGGACAGCTGCGGCCTGTTG----GTTCCAGCATTGAAGAGGGTCGGGGAGGCGT 17056077 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 | || ||||| || || || || || ||||| || || || || | ||| || ||| Sbjct 17056078 GGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGCTTCGATATCCGTCC 17056137 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 || ||||| || || || | ||| | ||| ||||| || | ||| | || || Sbjct 17056138 CGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCAT 17056197 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | || || | || ||| || |||| ||| || || ||||| |||| || || || | Sbjct 17056198 TGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTATAGGAGAAAT 17056257 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGA 78669 |||| || || || || | || || || ||||||| | |||||| || | | Sbjct 17056258 CTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGA-GT 17056316 Query 78670 CAGTAGTT-GAAATAATAGGAGATCGTACACCATTTTTA--GGATTAACATAGTTAAATA 78726 || || |||| || || || || | || | || || | ||||| | | Sbjct 17056317 GTGTCTTTCGAAACCATGGGGGA--GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTACA 17056374 Query 78727 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTA 78786 || ||||| || || || || | || || || || ||||| || ||||| ||||| | Sbjct 17056375 GGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAGACAGCAA 17056434 Query 78787 TTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTG 78846 | | ||| || || || ||||| || || | | || || |||||| || || || | Sbjct 17056435 TGCGTGCGGCGAGTATGGCATAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCCG 17056494 Query 78847 CCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 |||| | | || | ||| | || ||||| || | || | || || || || |||| Sbjct 17056495 CCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTCA 17056554 Query 78907 TGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT-AATA 78965 | | ||| | | || || |||||||| |||| | |||||| || || |||| || Sbjct 17056555 TCGTGATCTGAGCTGGGTCCACAAACTCCATGTTGAGTCCATAGCA-AAGCTTCTGGATG 17056613 Query 78966 CGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 |||||||||||||| || || || || ||| | || ||||| Sbjct 17056614 CGAGATGTGATTTTGTCGAACATGACGCGCTCTTGGCGTCCAT 17056656 >seq11 Length=32426571 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || ||||||| |||||||||||||| || || ||||| | Sbjct 23758247 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTCCTG 23758188 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| ||||| ||| | || || || ||||| |||| || || || || Sbjct 23758187 TTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGCGACTCAATGAT 23758129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| || || || ||||| || ||||||||||| || | |||||| | Sbjct 23755142 CACCACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGCGATGCGTGCAGCCA 23755083 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | || ||||| || || |||| || || |||||| || | ||||| || | | | | Sbjct 23755082 GGATTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTCTGCTGCCAGAGTGT 23755023 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGG 78909 | | ||| | || ||||| ||| | || | || || || || ||||||| Sbjct 23755022 CAAGCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTTCATGG 23754972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646509814880