Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 432 5e-116 seq11 86.0 9e-12 seq21 84.2 3e-11 >seq15 Length=39264731 Score = 432 bits (478), Expect = 5e-116 Identities = 1276/1952 (65%), Gaps = 39/1952 (2%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| |||||||||| ||||| || | || | || || || || || Sbjct 17054706 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTG 17054765 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| || || || | || | || ||||| || || || || || | || Sbjct 17054766 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 17054825 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 17054826 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17054885 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | |||||| | ||| || || || || ||||| ||||| || Sbjct 17054886 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 17054945 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | ||| ||||| | ||||| || ||||| || || || | || || Sbjct 17054946 TCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGAATGCCCTTACTCACCGGCGAGCCT 17055005 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | ||| || || || || || || |||| || ||||| ||||| || || || | Sbjct 17055006 TCATACGTCTCATAGGTGCCTAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCA 17055065 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || ||||| || || |||| | || || ||| || || | || ||||| ||| Sbjct 17055066 TAGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 17055125 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | || || || ||||| || | |||||| || || || || || || || || Sbjct 17055126 TAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGG 17055185 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | | | || || | |||||| | ||||| || || || || |||| || || Sbjct 17055186 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 17055245 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 | || ||||||| |||||| ||||| ||||| ||| ||| | | | || Sbjct 17055246 AAGTTCCTGACAATTACTTTGGTCACGTATGCCAGTTTTTTAAAGTCATAAGTCCGCTCA 17055305 Query 76256 A---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | || |||| || ||||| ||||| || ||||| || || || ||||| | | Sbjct 17055306 GGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCGCCACCTCGT---CC 17055362 Query 76313 TTGGCATATTGTATT-----ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGAT 76367 ||| || |||| | || |||||||| || || || |||||||| || || |||| Sbjct 17055363 TTGC--TAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGAT 17055420 Query 76368 TTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTT 76427 | || ||||||||||| |||| || | ||| || || | | |||| || ||||||| Sbjct 17055421 TCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCGTCCCAGTTT 17055480 Query 76428 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTAT 76486 | |||| || ||||| || | | ||| | | || ||| || | | | || Sbjct 17055481 CTGTCTGCGACTCGATGATTGCATACCATA-GCTGCTGAGCCTTCACCACACGCTTCACC 17055539 Query 76487 CGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCC 76546 | | ||| || |||||| || || | |||||| || || ||||| |||||| Sbjct 17055540 CTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCC 17055599 Query 76547 AAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTC 76606 | || || || || || ||||||| ||||| || | | | || ||||| ||| Sbjct 17055600 AGTCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTC 17055659 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 || ||||| ||||| ||||| || || || || || | || || | || || ||| Sbjct 17055660 ATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTT 17055719 Query 76667 CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 76726 || || ||||| || || || ||||| || | | |||| | ||||| || || || || Sbjct 17055720 CCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTAC 17055779 Query 76727 ATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTA 76786 || || | | || |||| ||| || || |||||||| | ||| | || ||||| || Sbjct 17055780 ATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATACCGTGCTGTGTTGTTG 17055839 Query 76787 TAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTT 76846 || || ||||||||||| | || ||||| || || || || || | ||| || | | Sbjct 17055840 TACACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCGGCAATGTAGC-T 17055898 Query 76847 CCACATGCA-CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAG 76905 || | || | | || || | | | ||| || ||||| || ||| ||||| || Sbjct 17055899 CCCCGTGGATCTGATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAG 17055958 Query 76906 AGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAG 76965 || || | |||| |||||| ||||| ||||| || || |||||| ||||| || || Sbjct 17055959 GGCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAG 17056018 Query 76966 AAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATG 77021 || ||||| |||| || || || ||||| ||||| || | || || || | Sbjct 17056019 GAAGCAGCTGGACAGCTGCGGCCTGTTG----GTTCCAGCATTGAAGAGGGTCGGGGAGG 17056074 Query 77022 CATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCC 77081 | || |||||||| || || || || || ||||| || || || | ||||| |||||| Sbjct 17056075 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGCTTCGATATCCG 17056134 Query 77082 ATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTAT 77141 || ||||| ||||| || | ||| | ||| ||||| || || || | || Sbjct 17056135 TCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGC 17056194 Query 77142 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 77201 ||| || || | || ||| || |||| ||| || || ||||| |||| || || | Sbjct 17056195 CATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTATAGGAGA 17056254 Query 77202 AGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA 77261 | ||||| || || || || |||| || || ||| || | | |||||| || Sbjct 17056255 AATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTC-- 17056312 Query 77262 TGACAGTG---GTAGAAATAATTGGAGA-TCGTATTCCATTTTTA--GGATTAACATAGT 77315 || ||| | |||| || || || | | || | || | || || | |||| Sbjct 17056313 -GAGTGTGTCTTTCGAAACCATGGGGGAGTGGCGTT---TGTTCAGGGGGTTGATGTAGT 17056368 Query 77316 TAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATA 77375 | | | ||| ||||| |||||||| || | || || || || ||||| || || || | Sbjct 17056369 TGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAGA 17056428 Query 77376 CGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTA 77435 | || || | || || || || |||||||| || | | || ||| ||||| || | Sbjct 17056429 CAGCAATGCGTGCGGCGAGTATGGCATAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGA 17056488 Query 77436 TTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAA 77495 | || ||||| | || || | || | || || || ||| | || | || || || | Sbjct 17056489 TCTCCGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATGA 17056548 Query 77496 CTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTC 77555 | ||||| | || | || || |||||||| |||| | ||||| || || ||| Sbjct 17056549 CCTTCATCGTGATCTGAGCTGGGTCCACAAACTCCATGTTGAGTCCATAGCA-AAGCTTC 17056607 Query 77556 T-AATACGAGATGTGATTTTATCAAACATGAC 77586 | || |||||||||||||| || |||||||| Sbjct 17056608 TGGATGCGAGATGTGATTTTGTCGAACATGAC 17056639 >seq11 Length=32426571 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || |||| ||||||||| || ||||||||||| || || || || | ||| Sbjct 23757120 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 23757061 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || ||||| |||| || || || | || |||||| || || | || | ||| | | Sbjct 23757060 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 23757001 Query 77114 ATATGCTGAGGTCGTTC 77130 || ||||| ||||| || Sbjct 23757000 ATGTGCTGGGGTCGCTC 23756984 >seq21 Length=37011614 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || || || ||||| | ||||| || | || || ||||||||||| || | ||| || Sbjct 18722850 TCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCTTC 18722791 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| | ||||| || || || ||||| ||||| |||||||| ||||| || || || Sbjct 18722790 AGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAGCC 18722731 Query 46774 ACAA 46777 |||| Sbjct 18722730 ACAA 18722727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712911523717440