Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1437 129 4e-25 >seq1437 Length=1065406 Score = 129 bits (142), Expect = 4e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || ||||| || ||| |||||| ||||||||||| || Sbjct 778639 CATGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 778698 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 778699 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 778758 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| || || || | | |||| | ||||||||| | | Sbjct 778759 GGGAATGCCCTCCTTATCCTGGAT-TTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCT 778817 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || || ||||| || |||||||||||||||||||| |||||| Sbjct 778818 CAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 778870 Score = 129 bits (142), Expect = 4e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || ||||| || ||| |||||| ||||||||||| || Sbjct 778867 CATGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 778926 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 778927 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 778986 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| || || || | | |||| | ||||||||| | | Sbjct 778987 GGGAATGCCCTCCTTATCCTGGAT-TTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCT 779045 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || || ||||| || |||||||||||||| ||||| |||||| Sbjct 779046 CAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 779098 Score = 125 bits (138), Expect = 5e-24 Identities = 173/240 (72%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 44101 TTATTTCATT--CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATG 44158 |||||| ||| || || || || | || || ||||| || ||| |||||| |||||| Sbjct 749324 TTATTT-ATTGGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATG 749382 Query 44159 TTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGC 44218 ||||| || | ||| ||| | || ||||||||||| || |||||||||| | |||| Sbjct 749383 TTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 749442 Query 44219 TGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCG 44278 || || | || | |||||||| ||| || || ||| | | | |||||||| Sbjct 749443 TGGTCAGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCA 749502 Query 44279 GCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || ||||||| || || ||||| || |||||||||||||||||||| |||||| Sbjct 749503 CTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 749562 Score = 125 bits (138), Expect = 5e-24 Identities = 169/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || ||||| || ||| |||||| ||||||||||| || Sbjct 778185 CATGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 778244 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 778245 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 778304 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| | || || | | |||| | ||||||||| | | Sbjct 778305 GGGAATGCCCTCCTTATCC--TGGATTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCT 778362 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || || ||||| || |||||||||||||| ||||| |||||| Sbjct 778363 CAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 778415 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || ||||| || ||| |||||| ||||||||||| || Sbjct 749559 CATGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 749618 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 749619 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG- 749677 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||| | | | |||||||| | || Sbjct 749678 GGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTC 749737 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || |||||||||||||||||||| |||||| Sbjct 749738 AACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 749789 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || |||||||| ||| |||||| ||||||||||| || Sbjct 749786 CATGCCACCCCTGAGACGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 749845 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| || ||||| |||| | |||||| || | Sbjct 749846 GGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGG 749905 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||| | | | |||||||| | || Sbjct 749906 GGGAATGCCTTCCTTATCCTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTTGGCTC 749965 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || |||||||| ||||| ||||| |||||| Sbjct 749966 AACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATG 750017 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || || ||||| || ||| |||||| ||||||||||| |||| | Sbjct 777961 CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 778020 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||||| | |||||| || | || Sbjct 778021 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 778080 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| || || || | | |||| | |||||||| | || || Sbjct 778081 ATGCCCTCCTTATCCTGGAT-TTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAAC 778139 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || ||||| || |||||||||||||| ||||| |||||| Sbjct 778140 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 778188 Score = 122 bits (134), Expect = 6e-23 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || ||||| || ||| |||||| ||||||||||| || Sbjct 778412 CATGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 778471 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 778472 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG- 778530 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| || || ||| | | | ||||||||| | || Sbjct 778531 GGGAATGCCCTCCTTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTC 778590 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || |||||||||||||||||||| |||||| Sbjct 778591 AACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 778642 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || ||||| || ||| |||||| ||||||||||| || Sbjct 779095 CATGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 779154 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| || |||||||||| | ||| || || | Sbjct 779155 AGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGG 779214 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| || || ||| | | | ||||||||| | || Sbjct 779215 GGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTC 779274 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || |||||||| ||||| ||||| |||||| Sbjct 779275 AACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATG 779326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359979137587839