Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq17 174 2e-38 seq8 114 2e-20 seq13 113 6e-20 >seq17 Length=40919683 Score = 174 bits (192), Expect = 2e-38 Identities = 183/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 ||| | ||||| || |||| || || || |||||||||||||||||||||||| || Sbjct 2456357 GCGGTGTTGACCATGTCGAAGCCGACTGTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 2456416 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 |||||||||||| || |||| ||||| ||||||||||| |||||||||| ||| | Sbjct 2456417 GGGGAGCAGATGGGATTTCCCATTAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACC 2456476 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 || | || || |||||| |||| || | |||||| ||||||| | || | ||| ||| Sbjct 2456477 ATTGTTTCCCCAAAGATGCCGTTAGGTCTGGGCTTCTCCACCAGCAGGCCCGGGTAGAGC 2456536 Query 8525 TCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 |||||||| |||||||| ||||| || || || | ||||| || || || || ||| Sbjct 2456537 TCCACAGCATCGACGTCCCCGTACAGCTCCTCCAGCACCGCAGCCATTTCTTTCTCCCCT 2456596 Query 8585 G 8585 | Sbjct 2456597 G 2456597 Score = 145 bits (160), Expect = 1e-29 Identities = 127/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| | |||||| || | ||||||||| ||| |||||| ||| | ||| || | Sbjct 2458084 CCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTATGGGTGGACC 2458143 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | |||||| ||||||||||| | ||||||||| | ||||||||| |||||||||||||| Sbjct 2458144 TCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCAGATGGTGGCGTACATCATC 2458203 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || ||||| |||||||| || ||||| || |||||||| Sbjct 2458204 AGACCAGGGACCAGGCCGAATGCCTCGTGGCCGACAGC 2458241 Score = 104 bits (114), Expect = 3e-17 Identities = 206/300 (69%), Gaps = 14/300 (5%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTG---A 9000 ||||| || ||||| || || || |||||||| || || || | | | |||||||| | Sbjct 2457421 CTTACCCGTCCGGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGCTCA 2457480 Query 9001 GTCATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTTTGTTTTATCAATC 9060 |||| || || ||||| |||| || | |||| || | ||| | ||||| Sbjct 2457481 GTCACGACAGAGG---TGTTGAAGACAAACTGCTTGTAGCTGTAATCTGTCTCCTCAATG 2457537 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | || ||| ||||| |||| ||||||||||| | |||| |||||||| || Sbjct 2457538 TGGAAACTATCAGGCATCAGAGGGTGCCAGTGATAAAGGGTGTTGAACTCGGATGCAATG 2457597 Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179 || || ||||||||||| || | ||||||||| || || | |||| ||| | || Sbjct 2457598 CGGTTCTGGTACTGGAAGCGCTG-GTTAAAGAGCAGCTCAGGGTCAAACTTCAGTTTGAA 2457656 Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTATTGC---GTCACGATAATGTTGATGGTTTCCCC 9236 || ||||| ||||| ||||| ||||| | | ||||| || |||||||| || || Sbjct 2457657 GTGATAGCCACTGAGATGCTGCACGTAGTCCTCAATCACG---ATTTTGATGGTCTCACC 2457713 >seq8 Length=62059223 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| || |||||||||||||||||||| |||| ||||| || ||| Sbjct 16800838 AAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGTTT 16800897 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||||||||| |||||||| || || |||| ||| | ||||| || || || ||| Sbjct 16800898 CCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATATG 16800957 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || | || | || |||| ||| || |||| ||| | |||| ||| || | ||| Sbjct 16800958 GCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGAGCGTCAATGTCA 16801017 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 16801018 CCGTAGAG 16801025 >seq13 Length=41232431 Score = 113 bits (124), Expect = 6e-20 Identities = 172/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| ||| |||| ||| || || | | ||| || |||||||||| Sbjct 33073802 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCCGTCTTGACGATATTA 33073743 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || ||||| || |||||||||||||||||||| | || |||||||| ||| Sbjct 33073742 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 33073683 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | |||||||| ||||| || ||||| |||| ||| | |||||||| || || ||| Sbjct 33073682 CCAAGCAGGCCTTTCAGGGAAAATGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 33073623 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || || ||||||| || || | || | || | ||| | ||||| || || | ||| Sbjct 33073622 GCATTAGGACGGGATTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCA 33073563 Query 8543 CCGTA 8547 ||||| Sbjct 33073562 CCGTA 33073558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716853797215680