Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1437 131 4e-25 >seq1437 Length=1065406 Score = 131 bits (144), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || |||||||| ||||| || || || Sbjct 750013 CAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGA--GCCAAGTG 749956 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| || || ||||| || ||||| || || || ||||||| Sbjct 749955 ACACCATCGAGAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 749896 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| |||||||| | || || |||| || ||| Sbjct 749895 AGAGGCTGATATTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 749836 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || |||||| || | ||||| Sbjct 749835 TCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGTCTCAG 749796 Score = 125 bits (138), Expect = 2e-23 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || ||||| || || || |||||||| ||||| || |||| Sbjct 778866 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC--- 778810 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| || || ||||| || || || || || || |||||| Sbjct 778809 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCTGACCAG 778750 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 778749 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 778690 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 778689 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 778649 Score = 125 bits (138), Expect = 2e-23 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || ||||| || ||||| || || || |||||||| ||||| || |||| Sbjct 779094 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC--- 779038 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| || || ||||| || || || || || || |||||| Sbjct 779037 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCTGACCAG 778978 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 778977 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 778918 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 778917 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 778877 Score = 122 bits (134), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || |||||||| ||||| || || || Sbjct 778184 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGA--GCCAAGTG 778127 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || ||||| || || || || || || ||||||| Sbjct 778126 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCTGACCAGC 778067 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 778066 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 778007 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 778006 TCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 777967 Score = 122 bits (134), Expect = 2e-22 Identities = 161/221 (73%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || ||||| || ||||| || || || |||||||| ||||| || |||| Sbjct 778411 CAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC--- 778355 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||||||||| || || ||||| || || || || || || |||||| Sbjct 778354 GACACCATTGAGAACGTCAAGGCCAA-ATCCAGGATAAGGAGGGCATTCCCCCTGACCAG 778296 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 778295 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 778236 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 778235 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 778195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203691609656998