Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq178749 123 3e-23 seq171131 114 1e-20 seq9526 109 6e-19 >seq178749 Length=757 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| ||||||||||||| || || ||||| ||||||| || || |||||| Sbjct 443 GGAGAGCGCGTGGTGGCCTTCGCCGCTGTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCC 384 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||| ||||| ||| |||||||||| Sbjct 383 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTC 324 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 323 ATCAGCAGAGACGAGG 308 >seq171131 Length=971 Score = 114 bits (126), Expect = 1e-20 Identities = 104/127 (82%), Gaps = 3/127 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||||||||| |||||| | ||| |||||||| |||| ||| | |||||| | Sbjct 606 AGGTGGACCTGTCAAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGAGGAGCGCTAC 664 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| |||| || |||||||||||||||||||||||||||||||| || Sbjct 665 TTCATCTCTCACGTGTTGGCTTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACTTG 724 Query 116804 GTCGAGC 116810 || |||| Sbjct 725 GT-GAGC 730 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662 || ||||| || |||||||| || |||| ||||| |||| |||||||| ||||||||| Sbjct 405 CGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTACAAGAAGGCCGAG 464 Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGT 116688 ||||| |||||||||| |||||||| Sbjct 465 GCGTCTTTCTGGACCGCAGAGGAGGT 490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | ||||| | || ||||| || || || Sbjct 858 GGTGGAGCGCTTCACCCAGGAAGTGCAGGTGACGGAGGCCAGATGTTTCTATGGTTTCCA 917 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916 |||||||||||||||| | ||||| || ||||| | || ||||||||||| || Sbjct 918 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTCATCGACACCTA 971 >seq9526 Length=675 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| | || |||| || ||||| |||||||| || | ||| Sbjct 675 GGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 616 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 |||||| |||||||||||||||||||||| |||| || ||||| || |||| ||||| Sbjct 615 ACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGG 556 Query 40912 GGCGG 40916 || || Sbjct 555 GGTGG 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513299113286640