Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq178749 123 3e-23
seq171131 114 1e-20
seq9526 109 6e-19
>seq178749
Length=757
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| |||||| ||||||||||||| || || ||||| ||||||| || || ||||||
Sbjct 443 GGAGAGCGCGTGGTGGCCTTCGCCGCTGTGGAGGGGATCTTCTTCTCTGGTTCCTTCGCC 384
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
||||| || ||||| ||||| | ||||| |||||||| ||||| ||| ||||||||||
Sbjct 383 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGACTGACCTTCTCCAACGAGCTC 324
Query 117152 ATCTCCAGGGACGAGG 117167
||| ||| |||||||
Sbjct 323 ATCAGCAGAGACGAGG 308
>seq171131
Length=971
Score = 114 bits (126), Expect = 1e-20
Identities = 104/127 (82%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743
||||||||||||| |||||| | ||| |||||||| |||| ||| | |||||| |
Sbjct 606 AGGTGGACCTGTCAAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGACGAGGAGCGCTAC 664
Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803
|||||| |||||| |||| || |||||||||||||||||||||||||||||||| ||
Sbjct 665 TTCATCTCTCACGTGTTGGCTTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACTTG 724
Query 116804 GTCGAGC 116810
|| ||||
Sbjct 725 GT-GAGC 730
Score = 93.3 bits (102), Expect = 4e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 116603 CGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAG 116662
|| ||||| || |||||||| || |||| ||||| |||| |||||||| |||||||||
Sbjct 405 CGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTACAAGAAGGCCGAG 464
Query 116663 GCGTCGTTCTGGACCGTCGAGGAGGT 116688
||||| |||||||||| ||||||||
Sbjct 465 GCGTCTTTCTGGACCGCAGAGGAGGT 490
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/116 (78%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| ||| | ||||| ||||||||| | ||||| | || ||||| || || ||
Sbjct 858 GGTGGAGCGCTTCACCCAGGAAGTGCAGGTGACGGAGGCCAGATGTTTCTATGGTTTCCA 917
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916
|||||||||||||||| | ||||| || ||||| | || ||||||||||| ||
Sbjct 918 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTCATCGACACCTA 971
>seq9526
Length=675
Score = 109 bits (120), Expect = 6e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||| ||| | |||||||| | || |||| || ||||| |||||||| || | |||
Sbjct 675 GGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 616
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|||||| |||||||||||||||||||||| |||| || ||||| || |||| |||||
Sbjct 615 ACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGG 556
Query 40912 GGCGG 40916
|| ||
Sbjct 555 GGTGG 551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 513299113286640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |