Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 307 9e-79
seq12009 118 9e-22
>seq285305
Length=1559
Score = 307 bits (340), Expect = 9e-79
Identities = 732/1103 (66%), Gaps = 31/1103 (3%)
Strand=Plus/Minus
Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689
|||||| || | ||||||| || |||||||| ||||| || | | ||| || |
Sbjct 1559 CCACAGGTCTGTCGGCGTC---TTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGAC 1503
Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTC 22749
|| ||| |||||| ||||| | || | ||||| || ||||||||||||||
Sbjct 1502 AGGAGAGCCCGGGTACGTCTCGTAGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTC 1443
Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC--- 22806
|| | |||| || || ||||| || || | |||| | || || | | |
Sbjct 1442 CAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTGA-----GCCGCTGAGCCTCT 1388
Query 22807 --GCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATA 22864
|||||| |||| |||||||| | ||| |||||||||| || || || || ||
Sbjct 1387 GGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAATCCTTGGACACCGATC 1328
Query 22865 CCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAA 22924
|||||||| | || | || ||| | || ||||||| || || | ||
Sbjct 1327 CCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACTGGGTAGAAGTTGATG 1268
Query 22925 TCGATTGTTCTGTTCAAGTTTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCA 22981
||||| | |||||| |||||| ||||||| || || | | |
Sbjct 1267 TCGATGATCTTGTTCAGGTTTCT---CACAATTACTTTGGTCACTTGGGCCAGTTTTTTA 1211
Query 22982 AAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGC 23039
||||| ||| | ||| | | || || |||||| ||||| || || ||||| |
Sbjct 1210 AAGTC--AAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTAC 1153
Query 23040 ATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACT 23099
| || |||||||| || | | ||||| || || || || || || ||||| || || |
Sbjct 1152 AGACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATT 1093
Query 23100 TTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGT 23159
| || ||||| | ||| ||||||||| || | ||||| | || |||||||||||||
Sbjct 1092 TGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGT 1033
Query 23160 ACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAA 23219
|||| || || || || ||| ||||| || || || ||||| |||||| | |
Sbjct 1032 ACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCTGCTGAGCCTTCA 973
Query 23220 C-ACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCA 23278
| ||| ||| | | |||| || ||| || || ||| | || ||||| || |
Sbjct 972 CCACG-CGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTCC 914
Query 23279 CCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCA 23338
|| | || ||| |||| ||||| | | |||||||||| ||| ||| | ||
Sbjct 913 CCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTG 854
Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398
|||| || | |||| || || || || ||||| || ||||||| || || | |||
Sbjct 853 CTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCT 794
Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458
| |||||| ||||| |||||||| |||| ||||| || || ||||| || ||||
Sbjct 793 CTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATGC 734
Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518
|||||||| ||||| | ||| || || || |||||||| ||||| ||||| ||||||||
Sbjct 733 CACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAT 674
Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578
|| |||||||||||||| || || ||||| || ||||| ||||| || |||| |
Sbjct 673 CGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTG 614
Query 23579 CCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCG 23635
|| || | ||| || ||| || | | | || | ||| || |||||
Sbjct 613 CCAGCGATGTAGCTC---CCGGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCC 557
Query 23636 CCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCC 23695
| ||||| || || | ||||| || ||||| ||||| || ||||| || ||||||||
Sbjct 556 GCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCG 497
Query 23696 TCTTTGGTCGCGACCAAGAAACA 23718
|| || | |||| || ||| ||
Sbjct 496 TCCTTCATGGCGAGCAGGAAGCA 474
>seq12009
Length=4249
Score = 118 bits (130), Expect = 9e-22
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||||||||| |||||||||| || ||||| || |||||||| | || || ||
Sbjct 3110 CACCTCGTCTTTACTGGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGT 3051
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
|||| ||| ||||||||| || | ||||| | ||||||||||||||||| || ||
Sbjct 3050 TCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGT 2991
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
||| || || ||| ||||||||||| || ||||||
Sbjct 2990 GCCAGTTTCTGTCTGTGACTCGATGATGGCGTGCCACA 2953
Score = 114 bits (126), Expect = 1e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397
|||||| || ||| |||| || || || || ||||| || ||| ||||||| || | |||
Sbjct 2610 ATTTTCCACTCGTTTCATGAACAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGC 2551
Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457
| | ||| ||||| || ||||| || ||||| ||||| || || ||||| || |||
Sbjct 2550 CCTCTGCTCTTCTTTACCTGTGTTTTTCTTCAACTCCAAGAACTCAAACACATCAAAATG 2491
Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||||||| ||||| || || || || || |||||||
Sbjct 2490 CCACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 2453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444105145640880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |