Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq285305 307 9e-79 seq12009 118 9e-22 >seq285305 Length=1559 Score = 307 bits (340), Expect = 9e-79 Identities = 732/1103 (66%), Gaps = 31/1103 (3%) Strand=Plus/Minus Query 22630 CCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 |||||| || | ||||||| || |||||||| ||||| || | | ||| || | Sbjct 1559 CCACAGGTCTGTCGGCGTC---TTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGAC 1503 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTC 22749 || ||| |||||| ||||| | || | ||||| || |||||||||||||| Sbjct 1502 AGGAGAGCCCGGGTACGTCTCGTAGGTGCCGTGCTCGGCGGCCAGATCGCAGCTCGCCTC 1443 Query 22750 CAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC--- 22806 || | |||| || || ||||| || || | |||| | || || | | | Sbjct 1442 CAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTGA-----GCCGCTGAGCCTCT 1388 Query 22807 --GCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATA 22864 |||||| |||| |||||||| | ||| |||||||||| || || || || || Sbjct 1387 GGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAATCCTTGGACACCGATC 1328 Query 22865 CCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAA 22924 |||||||| | || | || ||| | || ||||||| || || | || Sbjct 1327 CCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACTGGGTAGAAGTTGATG 1268 Query 22925 TCGATTGTTCTGTTCAAGTTTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCA 22981 ||||| | |||||| |||||| ||||||| || || | | | Sbjct 1267 TCGATGATCTTGTTCAGGTTTCT---CACAATTACTTTGGTCACTTGGGCCAGTTTTTTA 1211 Query 22982 AAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGC 23039 ||||| ||| | ||| | | || || |||||| ||||| || || ||||| | Sbjct 1210 AAGTC--AAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTAC 1153 Query 23040 ATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACT 23099 | || |||||||| || | | ||||| || || || || || || ||||| || || | Sbjct 1152 AGACCGCCACCTCATCCTGGCTGGTGTATTCAACTATCTCTGTGCAGAGATTACTGCATT 1093 Query 23100 TTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGT 23159 | || ||||| | ||| ||||||||| || | ||||| | || ||||||||||||| Sbjct 1092 TGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGT 1033 Query 23160 ACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAA 23219 |||| || || || || ||| ||||| || || || ||||| |||||| | | Sbjct 1032 ACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCTGCTGAGCCTTCA 973 Query 23220 C-ACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCA 23278 | ||| ||| | | |||| || ||| || || ||| | || ||||| || | Sbjct 972 CCACG-CGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCCTCAAACTCCTCC 914 Query 23279 CCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCA 23338 || | || ||| |||| ||||| | | |||||||||| ||| ||| | || Sbjct 913 CCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGTTG 854 Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 |||| || | |||| || || || || ||||| || ||||||| || || | ||| Sbjct 853 CTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCT 794 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 | |||||| ||||| |||||||| |||| ||||| || || ||||| || |||| Sbjct 793 CTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATCGAACACATCAAAATGC 734 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 |||||||| ||||| | ||| || || || |||||||| ||||| ||||| |||||||| Sbjct 733 CACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAT 674 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 || |||||||||||||| || || ||||| || ||||| ||||| || |||| | Sbjct 673 CGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGTTGGTG 614 Query 23579 CCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCG 23635 || || | ||| || ||| || | | | || | ||| || ||||| Sbjct 613 CCAGCGATGTAGCTC---CCGGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCC 557 Query 23636 CCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCC 23695 | ||||| || || | ||||| || ||||| ||||| || ||||| || |||||||| Sbjct 556 GCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGTCG 497 Query 23696 TCTTTGGTCGCGACCAAGAAACA 23718 || || | |||| || ||| || Sbjct 496 TCCTTCATGGCGAGCAGGAAGCA 474 >seq12009 Length=4249 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||||||||| |||||||||| || ||||| || |||||||| | || || || Sbjct 3110 CACCTCGTCTTTACTGGTGTACTCTATGATCTCGGTGCACAGATTGCTGGATTTGATGGT 3051 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 |||| ||| ||||||||| || | ||||| | ||||||||||||||||| || || Sbjct 3050 TCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGT 2991 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||| || || ||| ||||||||||| || |||||| Sbjct 2990 GCCAGTTTCTGTCTGTGACTCGATGATGGCGTGCCACA 2953 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397 |||||| || ||| |||| || || || || ||||| || ||| ||||||| || | ||| Sbjct 2610 ATTTTCCACTCGTTTCATGAACAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGC 2551 Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457 | | ||| ||||| || ||||| || ||||| ||||| || || ||||| || ||| Sbjct 2550 CCTCTGCTCTTCTTTACCTGTGTTTTTCTTCAACTCCAAGAACTCAAACACATCAAAATG 2491 Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||||| ||||| || || || || || ||||||| Sbjct 2490 CCACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 2453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444105145640880