Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq285305 403 2e-107 seq178749 93.3 5e-14 seq52848 87.8 2e-12 seq12009 87.8 2e-12 >seq285305 Length=1559 Score = 403 bits (446), Expect = 2e-107 Identities = 974/1472 (66%), Gaps = 34/1472 (2%) Strand=Plus/Minus Query 62664 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT 62723 || |||||||| | | | |||| || || || ||||| |||| | || || || Sbjct 1453 CAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTGAGCCGCTGA 1394 Query 62724 GCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62783 || || ||||| ||||| || ||| | || || || |||||||| |||||||| ||| Sbjct 1393 GCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAATCCTTGGACA 1334 Query 62784 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62843 || || ||||| || || || | ||| || || | |||||||| || | || || | Sbjct 1333 CCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACTGGGTAGAAG 1274 Query 62844 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 62903 || || || || || || || || ||||| |||||||||||| ||| | |||||| Sbjct 1273 TTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGGGCCAGTTTT 1214 Query 62904 AGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTA 62960 ||| ||||| ||| || | || ||||||| | || | || ||||||||| Sbjct 1213 TTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTA 1154 Query 62961 CACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 || || || ||||||| | || | |||| | |||||| ||||| |||||||| | Sbjct 1153 CAGACCGCCACCTCATCCTGGC--TGGTGTATTCAACTATCTCTGTGCAGAGATTACTGC 1096 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 | ||||| || || | ||| || || || ||||| |||| || || || || || || | Sbjct 1095 ATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCA 1036 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 || | || ||||| ||||| |||| || || ||||| || | ||| || |||||| Sbjct 1035 TGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCTGCTGAGCCT 976 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 | | | ||| | | || || || ||| || || | || ||||| | Sbjct 975 TCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCCTCAAACTCCT 916 Query 63199 CTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 | ||||| | ||||| | ||||| || ||||||||||| ||||| ||| || Sbjct 915 CCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGACCAGTCTTGGT 856 Query 63259 CATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTC 63315 | ||| ||||| ||||| ||||| || || ||||| || || || || || |||| Sbjct 855 --TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTAGAAAAGGTCTC 799 Query 63316 TTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63375 | | ||| || ||||| || || || ||||| || || || | ||| | | | |||| Sbjct 798 TGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATCGAACACATCAA 739 Query 63376 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63435 |||||||||| |||| ||| ||||| | |||| || | ||||| |||||||| || | Sbjct 738 AATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGA 679 Query 63436 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63495 ||||| || ||||| || ||||| |||| ||| || | | ||||| || | || | Sbjct 678 CGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTTAGAGTTGCCGT 619 Query 63496 TGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63555 |||| || | ||| |||| || | | | || || | | | ||| ||||| | Sbjct 618 TGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTC 559 Query 63556 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTAT 63615 | || ||| ||||| | ||||| | || | ||||||||| |||||||| ||||| | Sbjct 558 CCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCAATGCTGT 499 Query 63616 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAA 63675 | || ||||| || || || ||||| |||| || | | | |||| Sbjct 498 CGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTC--------- 448 Query 63676 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 ||||| || || || || || ||||| ||||| || | Sbjct 447 ----NNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTGTAGGTCTCGATGG 392 Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 | | ||| || | | || ||||| || | || | ||| | ||||||||| |||| Sbjct 391 CGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGCATGTGCTGCGGTC 332 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 || | | |||| ||| || ||||||| ||||||| |||| ||| || || |||| Sbjct 331 GCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGAGTCTTGAAGCCAA 272 Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT 63915 | ||||||| || || |||| ||| |||| || |||| ||||| || |||| | Sbjct 271 AGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTATTCT 212 Query 63916 TGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTA 63971 ||| || | | || | ||| || || || || || | |||| ||| Sbjct 211 CCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGTTT---ATTCAAG 156 Query 63972 GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTG 64031 || || | |||||| | | |||||||||||| ||||| || | ||| ||||| |||||| Sbjct 155 GGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTTCTTTGTCTCCTTG 96 Query 64032 TGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTA 64091 || || ||||| | || || | || || || ||||| || || || |||| || || Sbjct 95 TGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTG 36 Query 64092 CAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 64123 ||||| || || || |||||||| ||||| Sbjct 35 AGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4 >seq178749 Length=757 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || ||||||||||| ||||| | ||| | Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||||| || || || |||||||| || || || || || |||| Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427 Query 33724 C 33724 | Sbjct 428 C 428 >seq52848 Length=1214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || || ||||| | || |||||| | ||||| || ||||||||||| | ||| | Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167 Query 33664 TAAGCCAAAATATGGAAGCGAA-TGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 | |||||| | |||| ||| || || || || |||||||| || || || || ||||| Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107 Query 33723 GCAATAAGTCTCTCTCC 33739 || | | || |||||| Sbjct 106 GCCACGATTCGCTCTCC 90 >seq12009 Length=4249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| || || || ||||| || || || | || |||| ||||| | | Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 ||||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || |||||| | || | || || || |||||||| Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627470435131920