Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq285305 396 3e-105 seq12009 102 1e-16 seq178749 93.3 6e-14 >seq285305 Length=1559 Score = 396 bits (438), Expect = 3e-105 Identities = 982/1483 (66%), Gaps = 38/1483 (3%) Strand=Plus/Minus Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 || || || || |||||||| | | | |||| || || || || || |||| | || Sbjct 1462 GCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGTTG 1403 Query 65508 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 65567 || || || || |||| ||||| || ||| | || || || ||||| || ||| Sbjct 1402 AGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCAAT 1343 Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 ||||| ||||| || ||||| || || || | ||| || || | |||||||| || | Sbjct 1342 CCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCACT 1283 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 || || | || || || || || || || || ||||| |||||||||||| ||| | Sbjct 1282 GGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTTGG 1223 Query 65688 TTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACATGTTCAATGCAACAGAT 65744 |||||| ||| ||||| |||||| | || ||||||| | || | || Sbjct 1222 GCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGAC 1163 Query 65745 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 65802 ||||||||||| || || ||||||| | || | |||| | |||||| ||||| | Sbjct 1162 GCCAGATTACAGACCGCCACCTCATCCTGGC--TGGTGTATTCAACTATCTCTGTGCAGA 1105 Query 65803 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 65862 ||||||| || |||||||| || | ||| || || || ||||| |||| || || || | Sbjct 1104 GATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1045 Query 65863 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 65922 | || || ||| | || ||||| ||||| |||| || || ||||| || | ||| || Sbjct 1044 TGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACACCT 985 Query 65923 CTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTA--TAGTGTATACAATCG 65980 ||||||| | | ||| | || || || || | ||||| | | | Sbjct 984 GCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGCC- 926 Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 || ||||| || ||||| | ||||| || ||||| || ||||||||||| || Sbjct 925 -TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGAGA 867 Query 66041 CCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 ||| ||| || | ||| ||||| ||||| ||||| || || ||||| || || || Sbjct 866 CCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTA 810 Query 66099 -AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 || | ||||||| ||| || ||||| || || || ||||| || || || | ||| | Sbjct 809 GAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAATC 750 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | | |||| |||||||||| |||| ||| ||||| | |||| || | ||||| || Sbjct 749 GAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCC 690 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 |||||| || | ||||| || ||||| || ||||| |||| ||| || | | || || Sbjct 689 TCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCGTT 630 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAG 66337 || | || ||||| || | ||| ||||| || ||| | || || | | | Sbjct 629 AGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCAC 570 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||| ||||| || || ||| ||||| | ||||| | || | ||| ||||| ||||| Sbjct 569 ACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCC 510 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 || || || || ||| ||||| || || || ||||| |||| | ||| | || || Sbjct 509 TTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA---GCTGAGGCCT-GT 454 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 | | ||||| || || || || || ||||| Sbjct 453 T---------GGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTGTA 403 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 ||||| || || | ||| || | | || ||||| || | || | ||| | ||| Sbjct 402 GGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGCAT 343 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 |||||| |||| || | | ||| ||| || ||||||| ||||||| |||| ||| Sbjct 342 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGAGT 283 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 || || ||||| ||||||| || || |||| ||| |||| || |||||||||| Sbjct 282 CTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 223 Query 66698 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT---GTT 66753 || |||| | ||| | | | || | ||| || || || || || | ||| Sbjct 222 GTCTTTATTCTCCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGTT 164 Query 66754 TCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 66813 | ||| || |||| |||||| | | |||||||||||| ||||| || | ||| | Sbjct 163 T---ATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTTCT 107 Query 66814 ttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGAT 66873 |||| || ||||| || ||||| || || || | || || | ||||| || || || | Sbjct 106 TTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGGGT 47 Query 66874 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 66916 ||| || || ||||| || || || |||||||| ||||| Sbjct 46 GTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4 >seq12009 Length=4249 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || || |||||||| || || || || || |||| ||||| | | Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || |||||| | || | || ||||| |||||||| Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 65786 TATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 65845 ||| ||||| ||||| ||||| || | ||||||||||| | ||| || || || ||||| Sbjct 3086 TATGATCTCGGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTT 3027 Query 65846 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 65905 |||| || || ||||| || || ||| |||| || |||||||| |||| || || || Sbjct 3026 CCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCGAT 2967 Query 65906 AATCGCTTTCCA 65917 || || | ||| Sbjct 2966 GATGGCGTGCCA 2955 >seq178749 Length=757 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| || || | |||||||| || || ||||||||||| ||||| | ||| | Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || |||| || || || ||||| ||||| || || || || || || |||| Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427 Query 36300 C 36300 | Sbjct 428 C 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655719962744760