Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03]
298,139 sequences; 350,448,509 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq285305 390 2e-103
seq178749 111 2e-19
seq52848 96.9 5e-15
seq12009 96.9 5e-15
>seq285305
Length=1559
Score = 390 bits (432), Expect = 2e-103
Identities = 982/1485 (66%), Gaps = 38/1485 (3%)
Strand=Plus/Minus
Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384
|||| | || || |||||||| | | |||| || || || || ||||||| | |
Sbjct 1464 CGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGT 1405
Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444
|||| || || ||| |||| ||||| || ||| | || || || ||||| || |
Sbjct 1404 TGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCA 1345
Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504
||||||| ||||| || ||||| || || || | ||| || || | |||||||| || |
Sbjct 1344 ATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCA 1285
Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564
|| || | || || || || || || || || || || || ||||||||| ||| |
Sbjct 1284 CTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTT 1225
Query 79565 CCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGCGACAG 79621
||||| ||| ||||| || || | || ||||||| | |||| |
Sbjct 1224 GGGCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGG 1165
Query 79622 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATTTCAGTGCA 79679
| ||||||||||| || || ||||||| | || | |||| | ||| || |||||
Sbjct 1164 ACGCCAGATTACAGACCGCCACCTCATCCTGGC--TGGTGTATTCAACTATCTCTGTGCA 1107
Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739
||| ||||| || || ||||| || | ||| || || || ||||| |||| || || ||
Sbjct 1106 GAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 1047
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
|| || || ||| |||| ||||| ||||| |||| || || ||||| || | ||| ||
Sbjct 1046 TTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACAC 987
Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAAT 79857
||||||| | | |||| | || || || |||| ||||| | |
Sbjct 986 CTGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGC 927
Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917
| || ||||| || ||||| ||||| | || ||||| ||| ||||||||||
Sbjct 926 C--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGA 869
Query 79918 GACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975
||||| ||| | | |||| |||| ||||| ||||| || || ||||| || ||
Sbjct 868 GACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCG 812
Query 79976 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034
|| || || ||||||| ||| |||||||| || || || ||||| || || || | |||
Sbjct 811 TAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAA 752
Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094
| | | |||| |||||||||| |||| ||| ||||| | |||| |||| |||||
Sbjct 751 TCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTG 692
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
|||||||| || | ||||| || ||||| || ||||| |||| ||| || | | ||
Sbjct 691 CCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCG 632
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|| || | || ||||| || | ||| ||||| || | | | || || | |
Sbjct 631 TTAGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCC 572
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| ||| ||||| || || ||| ||||| | ||||| | || | ||| ||||| |||
Sbjct 571 ACACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATG 512
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334
|| || ||||| || || ||||| || || || ||||| |||| | ||| | ||
Sbjct 511 CCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA---GCTGAGGCCT- 456
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
||| | ||||| || || ||||| || |||
Sbjct 455 GTT---------GGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTG 405
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| ||||| || || | || || | | || ||||| |||| || | ||| | |
Sbjct 404 TAGGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGC 345
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
|||||||| |||| || | | ||| || || ||||||| ||| ||| |||| |
Sbjct 344 ATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGA 285
Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574
|| || || ||||| ||||||| || || |||| ||| |||| || ||||||||||
Sbjct 284 GTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGG 225
Query 80575 TTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAAT---G 80630
|| |||| | ||| | | | || | ||| || || || || || | |
Sbjct 224 CGGTCTTTATTCTCCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCG 166
Query 80631 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 80690
||| ||| || || | |||||| | | |||||||||||| ||||| || | |||
Sbjct 165 TTT---ATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTT 109
Query 80691 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGG 80750
||||| |||||||| || ||||| || || || | || || | ||||| || || ||
Sbjct 108 CTTTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGG 49
Query 80751 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 80795
|||| || || ||||| || || || |||||||| |||||
Sbjct 48 GTGTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4
>seq178749
Length=757
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| || || || |||||||| || || ||||||||||| ||||| | ||| |
Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| || |||| || || || ||||| |||||||| || || || ||||| ||||
Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427
Query 50102 CAACAAGTCTCTCTCC 50117
| || | | ||||||
Sbjct 428 CCACCACGCGCTCTCC 443
>seq52848
Length=1214
Score = 96.9 bits (106), Expect = 5e-15
Identities = 104/137 (76%), Gaps = 1/137 (1%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| || || ||||| || || || ||| | ||||| || ||||||||||| | ||| |
Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167
Query 50042 TAAGCCAAAATATGGACGCAAA-TGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAG 50100
| |||||| | |||| ||||| || ||||| |||||||| || || || || |||||
Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107
Query 50101 GCAACAAGTCTCTCTCC 50117
|| || | || ||||||
Sbjct 106 GCCACGATTCGCTCTCC 90
>seq12009
Length=4249
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
|||| || | ||| || || || ||||| || || || || || |||| ||||| | |
Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
||||||| || ||||||| || || ||||| || | || ||||||||||||||||
Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097
Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843
|| || || || |||||| | || | || ||||| ||||||||
Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715592000727960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |