Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pampus_20argenteus_20[genbank_20GCA_5F000697985.1_202014-06-03] 298,139 sequences; 350,448,509 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq285305 390 2e-103 seq178749 111 2e-19 seq52848 96.9 5e-15 seq12009 96.9 5e-15 >seq285305 Length=1559 Score = 390 bits (432), Expect = 2e-103 Identities = 982/1485 (66%), Gaps = 38/1485 (3%) Strand=Plus/Minus Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 |||| | || || |||||||| | | |||| || || || || ||||||| | | Sbjct 1464 CGGCCAGATCGCAGCTCGCCTCCAGGGAAGCGTAGTAGATTGTCTCAAAAATCTGGATGT 1405 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 |||| || || ||| |||| ||||| || ||| | || || || ||||| || | Sbjct 1404 TGAGCCGCTGAGCCTCTGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCGTCCGCCA 1345 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 ||||||| ||||| || ||||| || || || | ||| || || | |||||||| || | Sbjct 1344 ATCCTTGGACACCGATCCCGATCGGCCTGTGACGCTTGTTGGACTTCTCAGCTTCGGGCA 1285 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 || || | || || || || || || || || || || || ||||||||| ||| | Sbjct 1284 CTGGGTAGAAGTTGATGTCGATGATCTTGTTCAGGTTTCTCACAATTACTTTGGTCACTT 1225 Query 79565 CCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGCGACAG 79621 ||||| ||| ||||| || || | || ||||||| | |||| | Sbjct 1224 GGGCCAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGG 1165 Query 79622 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATTTCAGTGCA 79679 | ||||||||||| || || ||||||| | || | |||| | ||| || ||||| Sbjct 1164 ACGCCAGATTACAGACCGCCACCTCATCCTGGC--TGGTGTATTCAACTATCTCTGTGCA 1107 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||| ||||| || || ||||| || | ||| || || || ||||| |||| || || || Sbjct 1106 GAGATTACTGCATTTGATGGTGCCGAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 1047 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 || || || ||| |||| ||||| ||||| |||| || || ||||| || | ||| || Sbjct 1046 TTTGTAGAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCATACCACAC 987 Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAAT 79857 ||||||| | | |||| | || || || |||| ||||| | | Sbjct 986 CTGCTGAGCCTTCACCACGCGCTTGACCTTGCCCTCCCTCTCATATTTGGTGTAGAGAGC 927 Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 | || ||||| || ||||| ||||| | || ||||| ||| |||||||||| Sbjct 926 C--TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGCTCGGACACATCAGA 869 Query 79918 GACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 ||||| ||| | | |||| |||| ||||| ||||| || || ||||| || || Sbjct 868 GACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCGGGGATCCACAG-GCCG 812 Query 79976 TA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 || || || ||||||| ||| |||||||| || || || ||||| || || || | ||| Sbjct 811 TAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTGCCCGTGTTCTTCTTCAGCTCCAAGAAA 752 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | |||| |||||||||| |||| ||| ||||| | |||| |||| ||||| Sbjct 751 TCGAACACATCAAAATGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTG 692 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 |||||||| || | ||||| || ||||| || ||||| |||| ||| || | | || Sbjct 691 CCTCCCTGGTCGACGTATCGTGCCGTGTTGTTGTAAACCCTCAGCATGGGGACGAGCCCG 632 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || || | || ||||| || | ||| ||||| || | | | || || | | Sbjct 631 TTAGAGTTGCCGTTGGTGCCAGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCC 572 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || ||| ||||| | ||||| | || | ||| ||||| ||| Sbjct 571 ACACCGATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATG 512 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 || || ||||| || || ||||| || || || ||||| |||| | ||| | || Sbjct 511 CCTTCAATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA---GCTGAGGCCT- 456 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||| | ||||| || || ||||| || ||| Sbjct 455 GTT---------GGTTCNNNNNNNNNNNNNNNNNNNAACCACTTCTCTGACAGGAGGTTG 405 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || ||||| || || | || || | | || ||||| |||| || | ||| | | Sbjct 404 TAGGTCTCGATGGCGGCGTCAATGTTTGTTCCGTGGATTCCAACCGACACTCTCATGAGC 345 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 |||||||| |||| || | | ||| || || ||||||| ||| ||| |||| | Sbjct 344 ATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGA 285 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574 || || || ||||| ||||||| || || |||| ||| |||| || |||||||||| Sbjct 284 GTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGG 225 Query 80575 TTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAAT---G 80630 || |||| | ||| | | | || | ||| || || || || || | | Sbjct 224 CGGTCTTTATTCTCCAGAACAATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCG 166 Query 80631 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 80690 ||| ||| || || | |||||| | | |||||||||||| ||||| || | ||| Sbjct 165 TTT---ATTCAAGGGGTTGATGTAGTTGTACAGATCCTCCATCACGTCACTGAACACTTT 109 Query 80691 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGG 80750 ||||| |||||||| || ||||| || || || | || || | ||||| || || || Sbjct 108 CTTTGTCTCCTTGTGGAGGTTTGAGACAGCGATCCGCGCAGCGAGGATGGCGTAGTCGGG 49 Query 80751 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 80795 |||| || || ||||| || || || |||||||| ||||| Sbjct 48 GTGTTTGGTTGTGAGCGTGGCGGCGATCTCCGCTGCCAGCGTGTC 4 >seq178749 Length=757 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || ||||||||||| ||||| | ||| | Sbjct 308 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCTCTTCT 367 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| |||||||| || || || ||||| |||| Sbjct 368 TCAGCCAGAAGATGGCGGCGAAGGAACCAGAGAAGAAGATCCCCTCCACAGCGGCGAAGG 427 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 428 CCACCACGCGCTCTCC 443 >seq52848 Length=1214 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||||| || || || ||| | ||||| || ||||||||||| | ||| | Sbjct 226 CCTCATCCCTGCTAATCAGCTCATTAGAATAGGTGAGACCCGGCATTAGGCCTCTCTTCT 167 Query 50042 TAAGCCAAAATATGGACGCAAA-TGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAG 50100 | |||||| | |||| ||||| || ||||| |||||||| || || || || ||||| Sbjct 166 TTAGCCAATAAATGGCAGCAAACNGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCAAAA 107 Query 50101 GCAACAAGTCTCTCTCC 50117 || || | || |||||| Sbjct 106 GCCACGATTCGCTCTCC 90 >seq12009 Length=4249 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || || ||||| || || || || || |||| ||||| | | Sbjct 1216 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCGATTCGTGCGGCCACGA 1157 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 1156 TGGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 1097 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || |||||| | || | || ||||| |||||||| Sbjct 1096 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 1051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715592000727960